Browse Element(s) Details


Os.38009.2.S1_at

Description gb:NM_188608.1
DB_XREF= gi:34904299
TID=Os.38009.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38009 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g130009/11ethylene-responsive family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12950Os.24674.1.S1_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_s_at11/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.48021.1.S1_x_at9/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.52172.2.S1_x_at6/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12950Os.18766.1.S1_x_at2/111+7193824..7202484Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g12970NANA1+7206712..7208847retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g12980NANA1+7209074..7210053retrotransposon protein, putative, unclassified
LOC_Os01g12990OsAffx.16475.1.S1_at4/111+7212171..7212797hypothetical protein
LOC_Os01g13000Os.38009.1.S1_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000OsAffx.1258.1.S1_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000Os.38009.2.S1_x_at10/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13000Os.38009.2.S1_at9/111+7213315..7222025ethylene-responsive family protein, putative, expressed
LOC_Os01g13010NANA1+7232814..7233252hypothetical protein
LOC_Os01g13020OsAffx.22080.1.S1_at11/111+7236523..7237759hypothetical protein
LOC_Os01g13024NANA1+7241784..7242805expressed protein
LOC_Os01g13030Os.12733.1.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.2.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.3.S1_x_at10/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030OsAffx.22446.1.S1_x_at4/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38009.2.S1_at--182--3971NONE
CGGGAATGGTTTTTATATTGTGTCT
NONE
Os.38009.2.S1_at--772--2971NONE
AATGGTTTTTATATTGTGTCTGATC
NONE
Os.38009.2.S1_at--1049--7171Chr01:7214633..7214655 (23 bp)
GTCTGATCAATTTCGATCTCATTGC
LOC_Os01g13000
Os.38009.2.S1_at--1026--6451Chr01:7214629..7214653 (25 bp)
GATCAATTTCGATCTCATTGCTAGC
LOC_Os01g13000
Os.38009.2.S1_at--1101--191Chr01:7214624..7214648 (25 bp)
ATTTCGATCTCATTGCTAGCAGCTG
LOC_Os01g13000
Os.38009.2.S1_at--308--10631Chr01:7214622..7214646 (25 bp)
TTCGATCTCATTGCTAGCAGCTGTG
LOC_Os01g13000
Os.38009.2.S1_at--987--4031Chr01:7214620..7214644 (25 bp)
CGATCTCATTGCTAGCAGCTGTGTG
LOC_Os01g13000
Os.38009.2.S1_at--751--3711Chr01:7214609..7214633 (25 bp)
CTAGCAGCTGTGTGTGCGCAAATAT
LOC_Os01g13000
Os.38009.2.S1_at--843--5051Chr01:7214606..7214630 (25 bp)
GCAGCTGTGTGTGCGCAAATATGCA
LOC_Os01g13000
Os.38009.2.S1_at--493--7471Chr01:7214600..7214624 (25 bp)
GTGTGTGCGCAAATATGCAGGGAAT
LOC_Os01g13000
Os.38009.2.S1_at--1145--4571Chr01:7214594..7214618 (25 bp)
GCGCAAATATGCAGGGAATAATGGC
LOC_Os01g13000
Target Sequence 
CGGGAATGGTTTTTATATTGTGTCTGATCAATTTCGATCTCATTGCTAGCAGCTGTGTGTGCGCAAATATGCAGGGAATA
ATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38009.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis