Browse Element(s) Details


Os.38013.2.S1_x_at

Description gb:NM_187673.1
DB_XREF= gi:34902431
GEN=OJ1217B09.11
TID=Os.38013.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38013 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Unknown protein (OJ1217B09.11), mRNA.
PROD=Unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0896011/11Homeobox domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08930Os.31303.1.S1_at11/113+4608052..4609631Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g08940OsAffx.22270.1.S1_x_at11/113+4614255..4614680hypothetical protein
LOC_Os03g08950Os.20602.2.S1_x_at11/113+4625814..4627994hAT family dimerisation domain containing protein
LOC_Os03g08960Os.38013.2.S1_x_at11/113+4632047..4633905Homeobox domain containing protein, expressed
LOC_Os03g08960Os.38013.1.S1_a_at11/113+4632047..4633905Homeobox domain containing protein, expressed
LOC_Os03g08970Os.8111.1.S1_at11/113+4639974..4641187expressed protein
LOC_Os03g08980Os.9479.1.S1_at11/113+4644428..4646061expressed protein
LOC_Os03g08999Os.11584.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.1.S1_s_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.25023.1.S1_at11/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999Os.11584.2.S1_x_at10/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os03g08999OsAffx.15844.1.S1_at1/113+4646378..4659082oxidoreductase, zinc-binding dehydrogenase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009738biological_processabscisic acid mediated signaling
GO:0009787biological_processregulation of abscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0009825biological_processmultidimensional cell growth
GO:0009910biological_processnegative regulation of flower development
GO:0009965biological_processleaf morphogenesis
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38013.2.S1_x_at--573--1011Chr03:4633015..4633039 (25 bp)
AGGTACGCGCCCACCGCTGTGTTTT
LOC_Os03g08960
Os.38013.2.S1_x_at--703--8671Chr03:4633032..4633056 (25 bp)
TGTGTTTTGCCCGACGCGCGCGAGA
LOC_Os03g08960
Os.38013.2.S1_x_at--337--6011Chr03:4633053..4633077 (25 bp)
GAGAGCTTGTCACTCACCTTCAATT
LOC_Os03g08960
Os.38013.2.S1_x_at--781--9671Chr03:4633066..4633090 (25 bp)
TCACCTTCAATTCGTGCTCGATCGA
LOC_Os03g08960
Os.38013.2.S1_x_at--1147--7291Chr03:4633079..4633103 (25 bp)
GTGCTCGATCGATCAGATTCGGGAG
LOC_Os03g08960
Os.38013.2.S1_x_at--539--1611Chr03:4633102..4633126 (25 bp)
AGCTGAGGGAGAAGCTGCCCACCAA
LOC_Os03g08960
Os.38013.2.S1_x_at--299--9011Chr03:4633203..4633227 (25 bp)
TGCAAGGACGGCTCGTCGGACGACA
LOC_Os03g08960
Os.38013.2.S1_x_at--52--5731Chr03:4633230..4633254 (25 bp)
GACTCCAGCGTGGTGTTCAACGACG
LOC_Os03g08960
Os.38013.2.S1_x_at--756--5791Chr03:4633362..4633386 (25 bp)
GAGTCCAAATGGCACGGTCCGTACT
LOC_Os03g08960
Os.38013.2.S1_x_at--106--5711Chr03:4633392..4633416 (25 bp)
GACTCGTGCAAAGGCGGCGTCTATG
LOC_Os03g08960
Os.38013.2.S1_x_at--516--8371Chr03:4633407..4633431 (25 bp)
GGCGTCTATGGCTTCACGGAGGAAT
LOC_Os03g08960
Target Sequence 
AGGTACGCGCCCACCGCTGTGTTTTGCCCGACGCGCGCGAGAGCTTGTCACTCACCTTCAATTCGTGCTCGATCGATCAG
ATTCGGGAGCTGAGGGAGAAGCTGCCCACCAAGCCGGCGGACACGGCGGCATCGGTGAAGGTAGAAGCCGGCAATGACGC
GGCGGCCGGCGCCGCGGCCGCCACGGTGTGCAAGGACGGCTCGTCGGACGACAGCGACTCCAGCGTGGTGTTCAACGACG
AGGCGTCGCCGTACTCCGGCGCGGCCTTCATTGGATTCGGCCCGTCGTTCTTGGTCGACGACGCGTCGGCGGCAACCGTG
GGCTGCTCGTCGTCGCTCCCCGCGCTCGAGTCCAAATGGCACGGTCCGTACTCCGACGACTCGTGCAAAGGCGGCGTCTA
TGGCTTCACGGAGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38013.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis