Browse Element(s) Details


Os.38031.2.A1_at

Description gb:AK103688.1
DB_XREF= gi:32988897
TID=Os.38031.2
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136G12, full insert sequence.
FL= gb:AK103688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5391011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53860Os.11437.1.S1_at11/113+30833538..30838364Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g53880Os.27760.2.S1_at11/113+30840679..30850319tousled-like kinase 2, putative, expressed
LOC_Os03g53880Os.27760.1.S1_at11/113+30840679..30850319tousled-like kinase 2, putative, expressed
LOC_Os03g53890Os.10465.1.S1_at11/113+30850479..30852178expressed protein
LOC_Os03g53900Os.15989.1.S1_at11/113+30852224..30853439universal stress protein family protein, expressed
LOC_Os03g53910Os.38031.2.A1_at11/113+30854342..30857514TPR Domain containing protein, expressed
LOC_Os03g53920OsAffx.25707.1.S1_at11/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53920OsAffx.21469.1.S1_at1/113+30861273..30869829Kinesin motor domain containing protein, expressed
LOC_Os03g53930OsAffx.30531.1.S1_x_at2/113+30871401..30871904hypothetical protein
LOC_Os03g53939NANA3+30876526..30876679NA
LOC_Os03g53950Os.18627.1.S1_at10/113+30877679..30880133Strictosidine synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38031.2.A1_at--1059--9531Chr03:30855585..30855609 (25 bp)
TCTTTTGGAAGGCACTATGGACTCA
LOC_Os03g53910
Os.38031.2.A1_at--974--331Chr03:30854830..30854854 (25 bp)
ATAAAGACTTCATCATCCCTGCAAT
LOC_Os03g53910
Os.38031.2.A1_at--746--91Chr03:30854725..30854831 (25 bp)
ATTCCTGTGTTCTTTGTTGTTTCAA
LOC_Os03g53910
Os.38031.2.A1_at--396--5551Chr03:30854667..30854691 (25 bp)
GAAACTGGTCTTTGCCGTAATGCTT
LOC_Os03g53910
Os.38031.2.A1_at--941--4891Chr03:30854646..30854670 (25 bp)
GCTTAGCGTGATTCAGTTTGGCACA
LOC_Os03g53910
Os.38031.2.A1_at--413--2431Chr03:30854580..30854604 (25 bp)
AAAAGCTGGCCACCTAGTCATTCTT
LOC_Os03g53910
Os.38031.2.A1_at--418--7471Chr03:30854520..30854544 (25 bp)
GTGTGTTCTTTCCTGTATTTGGTAC
LOC_Os03g53910
Os.38031.2.A1_at--65--6891Chr03:30854486..30854510 (25 bp)
GTATTTTCCTATCCTTTGCTTGAGA
LOC_Os03g53910
Os.38031.2.A1_at--1062--1291Chr03:30854464..30854488 (25 bp)
AGATGCTCAGTATGCCGTTTCTGGA
LOC_Os03g53910
Os.38031.2.A1_at--185--2151Chr03:30854409..30854433 (25 bp)
ACAGCTTTGGGCCTGATTTAGCGCT
LOC_Os03g53910
Os.38031.2.A1_at--271--10171Chr03:30854370..30854394 (25 bp)
TATCTTGTACGCCATATCTACCAAC
LOC_Os03g53910
Target Sequence 
TCTTTTGGAAGGCACTATGGACTCAAAGTCANCTTCCTGAAAGCCTGCTTGATGAGGAAGATGGAGAAAATGATGATGGC
AAGAGCAGCACAATTACATCATCAGATAAGGGTTCTGTGAAGTGGATCAATGTAAAAGAGGGAAAAACTCTTCAAGAAGT
GCTGCAGCATAAAGACTTCATCATCCCTGCAATTCCTGTGTTCTTTGTTGTTTCAAGAAAATCCACCTTTTACAGANAGT
TCAAGGCAGGAAACTGGTCTTTGCCGTAATGCTTAGCGTGATTCAGTTTGGCACATTTGGAAGATGATTAGTGCGGTACG
CGTATGATCAGAGAAGAAAAGCTGGCCACCTAGTCATTCTTGTATGGTTTTATATGTTGCTTTATAGAATGATGAGGTGT
GTTCTTTCCTGTATTTGGTACAATTCTCAAGTATTTTCCTATCCTTTGCTTGAGATGCTCAGTATGCCGTTTCTGGAGAA
ACACACTGAGAATGTACTTATGTATGGACAGCTTTGGGCCTGATTTAGCGCTTGGCACAGTGATGGTATCTTGTACGCCA
TATCTACCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38031.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis