Browse Element(s) Details


Os.38047.1.S1_at

Description gb:AK066347.1
DB_XREF= gi:32976365
TID=Os.38047.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38047 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative RNA-binding protein (OSJNBa0028C16.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065B13, full insert sequence.
FL= gb:AK066347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0613011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06090OsAffx.20742.1.S1_at11/1110+3074744..3081593Protein kinase domain containing protein
LOC_Os10g06100OsAffx.20743.1.S1_at11/1110+3089631..3091177retrotransposon protein, putative, unclassified
LOC_Os10g06110OsAffx.8508.1.S1_at11/1110+3094723..3097486retrotransposon protein, putative, unclassified
LOC_Os10g06130Os.38047.1.S1_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06130Os.38047.2.S1_x_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06140OsAffx.20742.2.S1_x_at11/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.3.S1_x_at7/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.4.S1_x_at5/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.29386.2.S1_at1/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06150OsAffx.6589.1.S1_at11/1110+3118373..3119911NA
LOC_Os10g06160OsAffx.20741.1.S1_at11/1110+3125470..3126289transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38047.1.S1_at--521--3852Chr10:3098642..3098666 (25 bp)
CTGAATACCCATGCTAGAAATCCTG
LOC_Os10g06130
Os.38047.1.S1_at--812--612Chr10:3098632..3098656 (25 bp)
ATGCTAGAAATCCTGCATCCACCAC
LOC_Os10g06130
Os.38047.1.S1_at--260--4991Chr10:3098618..3098642 (25 bp)
GCATCCACCACTGCATATTGACAAT
LOC_Os10g06130
Os.38047.1.S1_at--1075--4351Chr10:3098614..3098638 (25 bp)
CCACCACTGCATATTGACAATTTAG
LOC_Os10g06130
Os.38047.1.S1_at--493--3131Chr10:3098596..3098620 (25 bp)
AATTTAGTCATTGTCTCTATCAACA
LOC_Os10g06130
Os.38047.1.S1_at--1017--7131Chr10:3098590..3098614 (25 bp)
GTCATTGTCTCTATCAACATTTTTG
LOC_Os10g06130
Os.38047.1.S1_at--397--3272Chr10:3098576..3098600 (25 bp)
CAACATTTTTGTTACAGCCTATGAT
LOC_Os10g06130
Os.38047.1.S1_at--92--10272Chr10:3098569..3098593 (25 bp)
TTTGTTACAGCCTATGATATATGGT
LOC_Os10g06130
Os.38047.1.S1_at--570--5671Chr10:3098007..3098031 (25 bp)
GACATACAGTTGGACCTGTCTACCT
LOC_Os10g06130
Os.38047.1.S1_at--1089--2111Chr10:3098002..3098026 (25 bp)
ACAGTTGGACCTGTCTACCTCTTTA
LOC_Os10g06130
Os.38047.1.S1_at--851--8531Chr10:3097997..3098021 (25 bp)
TGGACCTGTCTACCTCTTTACATTT
LOC_Os10g06130
Target Sequence 
CTGAATACCCATGCTAGAAATCCTGCATCCACCACTGCATATTGACAATTTAGTCATTGTCTCTATCAACATTTTTGTTA
CAGCCTATGATATATGGTAGAGGACCAGCACCAGCTGGAATGAGGATGGTACCAATGGTGCTCCCTGACGGTCGTCTGGG
ATATGTTCTGCAACAACCAGGTGGAATCCCTCCTCCGCCCCCACCGCGTCGGGGTGACCGGAGGGATGGTGGCAGCAGAG
GTGGCGAAGGGAGTCATGGCCGGCGATATCGCCCTTACTAGCTTTTTCNTTCCCTTGGTCCTGCCGCCATCCAGCCATCA
CGCAATGTGATGGATTTCTTAACCTAAAGAAACAAGATAGAAGCTTGTAACCCTGTTCCAGCATAACACCTGCAATTGCG
CAAGACATGTACCGTCTTCTTTTNTTNCAGTTATATTTATCTGTCATGCATGNGGTGCTTGTGACTTGAAAACAGTGTCT
TGAAGCTTTGTATCTCGCGGTGGCGTCTGTAGTGGTAAACCGATGGAATTGGAAAATTATCTNCAGACATACAGTTGGAC
CTGTCTACCTCTTTACATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis