Browse Element(s) Details


Os.38110.1.S1_at

Description gb:AK108163.1
DB_XREF= gi:32993372
TID=Os.38110.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative trehalase (OSJNBb0018B10.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-H02, full insert sequence.
FL= gb:AK108163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3766011/11Trehalase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37620NANA10+19801829..19804432retrotransposon protein, putative, unclassified
LOC_Os10g37630Os.2517.1.S1_a_at11/1110+19805769..19810079UBX domain containing protein, expressed
LOC_Os10g37640Os.46890.1.S1_x_at11/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.1.S1_s_at11/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.2.S1_x_at10/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.2.S1_at10/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37650OsAffx.18559.1.S1_x_at9/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37650OsAffx.18559.1.S1_at7/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37660Os.38110.1.S1_at11/1110+19824881..19829516Trehalase family protein, expressed
LOC_Os10g37670Os.46559.1.S1_at11/1110+19831327..19832769Actin-depolymerizing factor, putative, expressed
LOC_Os10g37680OsAffx.3017.1.S1_x_at2/1110+19834024..19836024hypothetical protein
LOC_Os10g37680OsAffx.31754.1.S1_x_at1/1110+19834024..19836024hypothetical protein
LOC_Os10g37690Os.2507.1.S1_at11/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37690Os.46640.1.S1_at5/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37700NANA10+19843860..19844269hypothetical protein
LOC_Os10g37710Os.16221.1.S1_at11/1110+19845969..19849489hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g37720OsAffx.6895.1.S1_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37720Os.5387.1.S1_x_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003825molecular_functionalpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
GO:0015927molecular_functiontrehalase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38110.1.S1_at--1080--5471Chr10:19825648..19825672 (25 bp)
GAACTTGCTGAGGACATTGCCACGA
LOC_Os10g37660
Os.38110.1.S1_at--733--4851Chr10:19825591..19825615 (25 bp)
GCTACCGGCGCGATGCATGAGAAGT
LOC_Os10g37660
Os.38110.1.S1_at--117--6631Chr10:19825262..19825286 (25 bp)
GTTGGTCCAACGGTGTGATATTATC
LOC_Os10g37660
Os.38110.1.S1_at--989--651Chr10:19825229..19825253 (25 bp)
ATGAATTTGGATGGCCTCAGGACAA
LOC_Os10g37660
Os.38110.1.S1_at--787--2891Chr10:19825177..19825201 (25 bp)
AATGTTAAACCCCATCTTCGCAGAT
LOC_Os10g37660
Os.38110.1.S1_at--172--331Chr10:19825106..19825130 (25 bp)
ATACACGGCTGTGCATTACACGCAA
LOC_Os10g37660
Os.38110.1.S1_at--195--8291Chr10:19825072..19825096 (25 bp)
GGCATTCTGCAATTCTGCTGTAGTT
LOC_Os10g37660
Os.38110.1.S1_at--840--111Chr10:19825027..19825051 (25 bp)
ATTCAGATTTCAGAGCATCACCCGC
LOC_Os10g37660
Os.38110.1.S1_at--904--1531Chr10:19825014..19825038 (25 bp)
AGCATCACCCGCAACTGTGTTTTTT
LOC_Os10g37660
Os.38110.1.S1_at--352--10351Chr10:19824983..19825007 (25 bp)
TTTTTGTAACTTGCCCTTTGCTGTA
LOC_Os10g37660
Os.38110.1.S1_at--187--9171Chr10:19824972..19824996 (25 bp)
TGCCCTTTGCTGTAACTCGTATCAA
LOC_Os10g37660
Target Sequence 
GAACTTGCTGAGGACATTGCCACGAGGTGGGTGAGAACAAACTATGATGCCTATAAGGCTACCGGCGCGATGCATGAGAA
GTACGATGTGGTGACCTGTGGAAAATCTGGAGGTGGGGGTGAATACAAACCCCAGACTGGTTTTGGTTGGTCCAACGGTG
TGATATTATCATTCTTGGATGAATTTGGATGGCCTCAGGACAAGAAGATAGACTGCTAGTCATCATGATGAATGTTAAAC
CCCATCTTCGCAGATGCAGAATGTGGCTAGGCTAGGCAGGTGTTTTTGTGTGCAACTGTATATACACGGCTGTGCATTAC
ACGCAAAGTTGAAGAGGCATTCTGCAATTCTGCTGTAGTTTTTATCTGACAAACATTTGCATTCAGATTTCAGAGCATCA
CCCGCAACTGTGTTTTTTTTTCTTTTTTTGTAACTTGCCCTTTGCTGTAACTCGTATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis