Browse Element(s) Details


Os.38289.2.S1_s_at

Description gb:AK069015.1
DB_XREF= gi:32979039
TID=Os.38289.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38289 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170A05, full insert sequence.
FL= gb:AK069015.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5314011/11Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os09g286101/11Sec23/Sec24 trunk domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53100Os.47324.1.S1_s_at11/113+30401928..30403549Response regulator receiver domain containing protein, expressed
LOC_Os03g53110Os.10759.1.S1_at11/113+30404171..30409407magnesium transporter CorA-like family protein, putative, expressed
LOC_Os03g53119NANA3+30414593..30415220NA
LOC_Os03g53130Os.35344.3.S1_x_at11/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130Os.35344.18.S1_x_at10/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130OsAffx.22940.5.S1_x_at3/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53140Os.38289.1.S1_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53140Os.38289.2.S1_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53140Os.38289.2.S1_s_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53150Os.8585.1.S1_at10/113+30431072..30433699Auxin-responsive protein IAA14, putative, expressed
LOC_Os03g53160OsAffx.13476.1.S1_at8/113+30437817..30438681hypothetical protein
LOC_Os03g53170OsAffx.30088.1.S1_at11/113+30453002..30456985pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38289.2.S1_s_at--1131--5272Chr09:17411880..17411899 (20 bp)
GAATGTCATATTCACAGATGATGTT
LOC_Os09g28610
Os.38289.2.S1_s_at--393--1011Chr03:30430281..30430305 (25 bp)
AGGATTGATGGATCATGTGGACTGT
LOC_Os03g53140
Os.38289.2.S1_s_at--908--7811Chr03:30430322..30430346 (25 bp)
GGTCTTCTGTTATCTTGAAAGTTCC
LOC_Os03g53140
Os.38289.2.S1_s_at--1111--9451Chr03:30430327..30430351 (25 bp)
TCTGTTATCTTGAAAGTTCCGGGAG
LOC_Os03g53140
Os.38289.2.S1_s_at--33--2831Chr03:30430340..30430364 (25 bp)
AAGTTCCGGGAGAGCTTTACTGCTT
LOC_Os03g53140
Os.38289.2.S1_s_at--434--8051Chr03:30430348..30430372 (25 bp)
GGAGAGCTTTACTGCTTGGAAGGAT
LOC_Os03g53140
Os.38289.2.S1_s_at--891--8511Chr03:30430364..30430388 (25 bp)
TGGAAGGATGGGATCTCCTCGAGTT
LOC_Os03g53140
Os.38289.2.S1_s_at--1136--9251Chr03:30430379..30430403 (25 bp)
TCCTCGAGTTGTTGTACATTTCACC
LOC_Os03g53140
Os.38289.2.S1_s_at--297--9771Chr03:30430454..30430478 (25 bp)
TAATGTCTATTATTTATGCTCTACA
LOC_Os03g53140
Os.38289.2.S1_s_at--607--1131Chr03:30430479..30430503 (25 bp)
AGTGCTGGAGTTCTCTTGAGACATT
LOC_Os03g53140
Os.38289.2.S1_s_at--371--6731Chr03:30430488..30430512 (25 bp)
GTTCTCTTGAGACATTTGCTAATTT
LOC_Os03g53140
Target Sequence 
GAATGTCATATTCACAGATGATGTTTGCTTGCAAGTTTATTGAACACTTGNAGTAATTTGCTGTGCAGGATTGATGGATC
ATGTGGACTGTTTATATGTTACTTTCTGGTCTTCTGTTATCTTGAAAGTTCCGGGAGAGCTTTACTGCTTGGAAGGATGG
GATCTCCTCGAGTTGTTGTACATTTCACCAGCTCCANTTTGATGTAAGCCATCACTTAATATTTTTGTATAGAATGCTAT
AATGTCTATTATTTATGCTCTACAAGTGCTGGAGTTCTCTTGAGACATTTGCTAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38289.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis