Browse Element(s) Details


Os.38320.2.S1_at

Description gb:AK066256.1
DB_XREF= gi:32976274
TID=Os.38320.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013057C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057C10, full insert sequence.
FL= gb:AK066256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g055304/11hypothetical protein
LOC_Os11g316301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05480Os.10700.1.S1_at11/115+2703713..2711749DegP2 protease, putative, expressed
LOC_Os05g05490Os.57324.1.S1_at10/115+2712277..2715019pentatricopeptide, putative, expressed
LOC_Os05g05500NANA5+2715497..2716681F-box domain containing protein, expressed
LOC_Os05g05510Os.54693.1.S1_at11/115+2717725..2719085expressed protein
LOC_Os05g05520OsAffx.2625.1.S1_at4/115+2720693..2726429transposon protein, putative, Mutator sub-class
LOC_Os05g05520Os.50043.1.A1_at1/115+2720693..2726429transposon protein, putative, Mutator sub-class
LOC_Os05g05530Os.38320.2.S1_at4/115+2729709..2736402hypothetical protein
LOC_Os05g05540NANA5+2736704..2737724hypothetical protein
LOC_Os05g05550NANA5+2737879..2739454expressed protein
LOC_Os05g05560Os.37511.1.S1_at10/115+2741273..2742846expressed protein
LOC_Os05g05570NANA5+2743232..2743573Agenet domain containing protein
LOC_Os05g05580NANA5+2745546..2753325expressed protein
LOC_Os05g05590Os.27479.1.S1_at11/115+2755406..2761564sodium/hydrogen exchanger 3 family protein, expressed
LOC_Os05g05590OsAffx.25220.1.S1_at1/115+2755406..2761564sodium/hydrogen exchanger 3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38320.2.S1_at--1079--291NONE
ATAGCTCAAGGTTCCTAATTGGCTT
NONE
Os.38320.2.S1_at--167--3171Chr05:2729826..2729850 (25 bp)
AATTGGCTTCAGAATCGGCTTACAA
LOC_Os05g05530
Os.38320.2.S1_at--143--7551Chr05:2729778..2729802 (25 bp)
GTGGCGTCTTATCTTGACCAGAGTT
LOC_Os05g05530
Os.38320.2.S1_at--1082--6072Chr11:17993915..17993936 (22 bp)
GAGTTTGTCAAATTCGCTTGCCTAC
LOC_Os11g31630
Os.38320.2.S1_at--910--4911Chr05:2729743..2729767 (25 bp)
GCTTGCCTACTTCTGCGTTATATAA
LOC_Os05g05530
Os.38320.2.S1_at--1061--171Chr05:2729708..2729732 (25 bp)
ATTTTTCTTATAGCCATGCCATGAG
NONE
Os.38320.2.S1_at--110--3071NONE
AATAGAACCAAGGACGATAGCTTCA
NONE
Os.38320.2.S1_at--1056--3151NONE
AATTGCGATGGAGTATGCTATCATG
NONE
Os.38320.2.S1_at--764--8431Chr05:2727863..2727887 (25 bp)
GGCCTTTGAAGGTATTACAGTGATA
NONE
Os.38320.2.S1_at--1130--9651Chr05:2727822..2727846 (25 bp)
TCACCAGGCTTCTATACTAGATATC
NONE
Os.38320.2.S1_at--349--9831Chr05:2727772..2727796 (25 bp)
TAAACCAGACAACCTAATTAGCTAT
NONE
Target Sequence 
ATAGCTCAAGGTTCCTAATTGGCTTCAGAATCGGCTTACAAGCTAAATGTAAATTTGATGTTGGGTGGCGTCTTATCTTG
ACCAGAGTTTGTCAAATTCGCTTGCCTACTTCTGCGTTATATAACTTGCAAGCTATTTTTCTTATAGCCATGCCATGAGC
TTCGATGCACCTTCTACTCCATTGCCTCACGTATGCAGCTGTGTTTTGATATATATGGTACAGTGACTTTGTGAGCAGCT
CAGTTTAATAGAACCAAGGACGATAGCTTCAATTTAACAGTGCACCTTCACTACTTGATAATTGCGATGGAGTATGCTAT
CATGACACACAAGGATTTTTTGTTGGGTGCTGTGTACAATTATTTTTATCGAGGCCTTTGAAGGTATTACAGTGATATAT
TGTTACATCTCCTTCACCAGGCTTCTATACTAGATATCCTCCTATTACTATTTTAATTCTTTTTAAACCAGACAACCTAA
TTAGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38320.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis