Browse Element(s) Details


Os.38395.1.S1_at

Description gb:AK059934.1
DB_XREF= gi:32969952
TID=Os.38395.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative mutator-like transposase (OSJNBa0065J17.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-C11, full insert sequence.
FL= gb:AK059934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0305011/11expressed protein
LOC_Os08g139709/11retrotransposon protein, putative, unclassified
LOC_Os01g631708/11transposon protein, putative, Mutator sub-class
LOC_Os04g418408/11transposon protein, putative, Mutator sub-class
LOC_Os05g169107/11transposon protein, putative, Mutator sub-class
LOC_Os03g021306/11hypothetical protein
LOC_Os11g151702/11transposon protein, putative, Mutator sub-class
LOC_Os04g530901/11SWIM zinc finger family protein
LOC_Os01g362501/11transposon protein, putative, Mutator sub-class
LOC_Os01g416201/11transposon protein, putative, Mutator sub-class
LOC_Os04g247301/11transposon protein, putative, Mutator sub-class
LOC_Os03g057901/11transposon protein, putative, Mutator sub-class
LOC_Os07g395801/11hypothetical protein
LOC_Os07g202401/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g191601/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g024201/11transposon protein, putative, Mutator sub-class
LOC_Os03g451401/11transposon protein, putative, Mutator sub-class
LOC_Os04g554501/11transposon protein, putative, Mutator sub-class
LOC_Os07g226101/11transposon protein, putative, Mutator sub-class
LOC_Os11g136401/11transposon protein, putative, Mutator sub-class
LOC_Os05g397801/11transposon protein, putative, Mutator sub-class
LOC_Os09g172001/11transposon protein, putative, Mutator sub-class
LOC_Os01g198941/11transposon protein, putative, Mutator sub-class
LOC_Os06g358001/11Transposable element protein, putative, MuDR
LOC_Os02g439901/11hypothetical protein
LOC_Os01g362601/11Transposable element protein, putative, MuDR
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03020Os.1148.1.S1_at11/113+1210568..121280950S ribosomal protein L11, chloroplast precursor, putative, expressed
LOC_Os03g03034Os.53217.1.S1_x_at11/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.10510.1.S1_at10/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.43567.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.38172.1.S1_x_at4/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.9332.2.S1_x_at2/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03034Os.56310.1.A1_s_at1/113+1213799..1223277oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os03g03050Os.38395.1.S1_at11/113+1237693..1238873expressed protein
LOC_Os03g03050Os.38395.3.S1_x_at6/113+1237693..1238873expressed protein
LOC_Os03g03050Os.38395.2.S1_x_at5/113+1237693..1238873expressed protein
LOC_Os03g03060Os.38395.4.S1_x_at9/113+1241934..1247317transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g03070Os.4706.1.S1_a_at11/113+1248228..1250128K-box region family protein, expressed
LOC_Os03g03080OsAffx.12717.1.S1_at11/113+1254653..1255334hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38395.1.S1_at--967--104325Chr07:23718064..23718087 (24 bp)
TTATGTTCACCCCTCGCAGGGAGCT
LOC_Os07g39580
Os.38395.1.S1_at--118--19729Chr11:13990174..13990198 (25 bp)
ACTGATCGTCCTTGACTTATCTATT
NONE
Os.38395.1.S1_at--8--72730Chr11:13990181..13990205 (25 bp)
GTCCTTGACTTATCTATTTGTATTA
NONE
Os.38395.1.S1_at--930--71320Chr11:13990214..13990238 (25 bp)
GTCATTTATGTTCTGTCCGTACTAT
NONE
Os.38395.1.S1_at--776--72527Chr11:13990228..13990252 (25 bp)
GTCCGTACTATTTGAGAAACACTTT
NONE
Os.38395.1.S1_at--243--59729Chr11:13990241..13990265 (25 bp)
GAGAAACACTTTACGATTAACTTAG
NONE
Os.38395.1.S1_at--828--6551Chr03:1237755..1237779 (25 bp)
GATTAACTTAGTACTATCAGGACTA
LOC_Os03g03050
Os.38395.1.S1_at--239--8131Chr03:1237736..1237760 (25 bp)
GGACTATTTCATAAACTTCTTCGGA
LOC_Os03g03050
Os.38395.1.S1_at--2--23930Chr11:13990286..13990310 (25 bp)
AAACTTCTTCGGATAATTACTCAGT
NONE
Os.38395.1.S1_at--1075--64531Chr11:13990297..13990321 (25 bp)
GATAATTACTCAGTAGCATACCCTT
NONE
Os.38395.1.S1_at--1137--15330Chr11:13990311..13990335 (25 bp)
AGCATACCCTTCGAATGAATCATGA
NONE
Target Sequence 
TTATGTTCACCCCTCGCAGGGAGCTTCTGGGTCGGCACACTTCCCTTACATGCCAACGGGGGACAACGTGTTGAACACAC
CAGTATGGGGACTTCATATCACTCCGCGTGCGCCAGAGCAGGGCCACACACAGCATACATACGATGAGTACGGTTCGGCG
TCGACGCATCACGGAGTGCCTGCTTACTCCCCTCGCACAGCATTCATTGAGGACTTCTTTTTCACTGATCCTCCCCAGGG
GGAAGTAGGGATGGATTACTGGCACGCAGCACCTCAGGTCACACAGCCGACGCAGGAGACGGAGGCCGGTCAGGGGCCAG
ACGTGACACCACAGCAGGCAGCTAGAGATAGGCACCCCCCTGATAATTTGACATATCCCACTGAGCAGATTAGGCGTAGG
AAGAAGGGAGGACCTAGCAAGCGTGCGAAGGGCACTGATCGTCCTTGACTTATCTATTTGTATTAAACTTTTAGTCATTT
ATGTTCTGTCCGTACTATTTGAGAAACACTTTACGATTAACTTAGTACTATCAGGACTATTTCATAAACTTCTTCGGATA
ATTACTCAGTAGCATACCCTTCGAATGAATCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38395.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis