Browse Element(s) Details

Os.38797.1.S1_at

Description

gb:BM038777
DB_XREF= gi:16754398
DB_XREF=V009F05
CLONE=V009F05
TID=Os.38797.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.38797 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with strong similarity to protein pir:T49153 (A.thaliana) T49153 ribosomal protein L11-like - Arabidopsis thaliana
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g35730	3/11	60S ribosomal protein L11-1, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g35690	OsAffx.20313.1.S1_x_at	4/11	6	+	20828124..20828847	hypothetical protein
LOC_Os06g35700	Os.27507.1.S1_at	10/11	6	+	20831523..20833494	Reticuline oxidase precursor, putative, expressed
LOC_Os06g35700	OsAffx.11451.4.S1_x_at	1/11	6	+	20831523..20833494	Reticuline oxidase precursor, putative, expressed
LOC_Os06g35700	Os.47789.1.A1_at	1/11	6	+	20831523..20833494	Reticuline oxidase precursor, putative, expressed
LOC_Os06g35710	OsAffx.22947.1.S1_x_at	11/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710	OsAffx.22947.2.S1_x_at	4/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710	OsAffx.22947.3.S1_x_at	3/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35710	OsAffx.22947.5.S1_x_at	3/11	6	+	20837753..20844117	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35720	NA	NA	6	+	20846326..20848652	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g35730	Os.38797.1.S1_at	3/11	6	+	20850303..20854493	60S ribosomal protein L11-1, putative, expressed
LOC_Os06g35730	OsAffx.25258.2.S1_x_at	2/11	6	+	20850303..20854493	60S ribosomal protein L11-1, putative, expressed
LOC_Os06g35730	OsAffx.25258.2.S1_at	1/11	6	+	20850303..20854493	60S ribosomal protein L11-1, putative, expressed
LOC_Os06g35740	OsAffx.5022.1.S1_at	11/11	6	+	20858957..20859831	hypothetical protein
LOC_Os06g35750	OsAffx.27954.1.S1_at	11/11	6	+	20860227..20861352	hypothetical protein
LOC_Os06g35760	OsAffx.15759.1.S1_at	10/11	6	+	20863870..20864853	hypothetical protein
LOC_Os06g35770	NA	NA	6	+	20867429..20868548	expressed protein
LOC_Os06g35780	Os.46785.2.S1_x_at	2/11	6	+	20878191..20883205	retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006412	biological_process	protein biosynthesis
GO:0007049	biological_process	cell cycle
GO:0010102	biological_process	lateral root morphogenesis
GO:0005842	cellular_component	cytosolic large ribosomal subunit (sensu Eukaryota)
GO:0003735	molecular_function	structural constituent of ribosome

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.38797.1.S1_at--531--977	1	Chr06:20851521..20851541 (21 bp)	TAAGGCTAGATACACCGTTCGCTCA	LOC_Os06g35730
Os.38797.1.S1_at--408--319	1	Chr06:20851438..20851462 (25 bp)	CAATGCAGCTTCTTGAGAGTGGACT	LOC_Os06g35730
Os.38797.1.S1_at--431--741	1	Chr06:20850382..20850406 (25 bp)	GTGTTGGCATTCAGCACCGGGTGAC	LOC_Os06g35730
Os.38797.1.S1_at--884--89	1	Chr06:20850301..20850325 (25 bp)	AGGCCCAGGCTAATACATCTTAAGA	NONE
Os.38797.1.S1_at--37--29	1	Chr06:20850267..20850291 (25 bp)	ATAGGTTTTAGGTCCAGTCACTGCT	NONE
Os.38797.1.S1_at--209--435	1	Chr06:20850254..20850278 (25 bp)	CCAGTCACTGCTTGTTATGAGCGCA	NONE
Os.38797.1.S1_at--56--589	1	Chr06:20850236..20850260 (25 bp)	GAGCGCAGACAAGTTTTTATTTCAC	NONE
Os.38797.1.S1_at--620--1035	1	Chr06:20850221..20850245 (25 bp)	TTTATTTCACCTAATGCAATGCCGG	NONE
Os.38797.1.S1_at--1041--803	1	Chr06:20850198..20850222 (25 bp)	GGAGTATATTATTTTGCCAAGTCGT	NONE
Os.38797.1.S1_at--1120--121	1	Chr06:20850165..20850189 (25 bp)	AGTTCGTTTTGCACTTGGGAGCGTA	NONE
Os.38797.1.S1_at--339--863	1	Chr06:20850150..20850174 (25 bp)	TGGGAGCGTATAACGCCGGTCACTT	NONE

Target Sequence

TAAGGCTAGATACACCGTTCGCTCATTTGGCATCAGGCGTAATGAGAAGATTGCGTGCTATGTAACTGTTAGGGGTGAGA
AGGCAATGCAGCTTCTTGAGAGTGGACTGAAGGTGAAGGAATATGAACTTCTGAGAAGAAACTTCAGTGAAACTGGGTGT
TTTNGGTTTTGGAATCCAGGAGCACATTGATCTTGGCATCAAGTATGATCCTTCAACAGGTATTTATGGCATGGACTTCT
ATGTTGTCCTTGAGCGTGCTGGATACCGTGTTGCTCGCCGTCGCAGGTGCAAGTCCCGTGTTGGCATTCAGCACCGGGTG
ACCAAGGAGGATGCCATGAAGTGGTTCCAGGTCAAGTACGAAGGTGTTATCCTCAACAAGGCCCAGGCTAATACATCTTA
AGACCTGATTTGATAGGTTTTAGGTCCAGTCACTGCTTGTTATGAGCGCAGACAAGTTTTTATTTCACCTAATGCAATGC
CGGAGTATATTATTTTGCCAAGTCGTTTTGTTTGAGTTCGTTTTGCACTTGGGAGCGTATAACGCCGGTCACTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis