Browse Element(s) Details


Os.38851.1.A1_s_at

Description gb:BI305727
DB_XREF= gi:14981153
DB_XREF=NL_1_P06
CLONE=NL_1_P06
TID=Os.38851.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.38851 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566866.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5593011/11Uncharacterised protein family containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55890OsAffx.22947.1.S1_x_at11/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55890OsAffx.22947.2.S1_x_at3/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55890OsAffx.22947.3.S1_x_at3/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55890OsAffx.22947.5.S1_x_at2/114+33062433..33067007retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g55899NANA4+33068089..33068301hypothetical protein
LOC_Os04g55910Os.56089.1.S1_at1/114+33070057..33070671transposon protein, putative, unclassified
LOC_Os04g55920Os.12830.1.S1_at11/114+33087397..33091165ZIM motif family protein, expressed
LOC_Os04g55930Os.8192.1.S1_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55930Os.57383.1.S1_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55930Os.38851.1.A1_s_at11/114+33091947..33093985Uncharacterised protein family containing protein, expressed
LOC_Os04g55940Os.18175.1.S1_at11/114+33095564..33099970Vacuolar cation/proton exchanger 3, putative, expressed
LOC_Os04g55950OsAffx.4187.1.S1_x_at11/114+33106151..33106677expressed protein
LOC_Os04g55950OsAffx.4187.1.S1_at11/114+33106151..33106677expressed protein
LOC_Os04g55960Os.15108.1.S1_at11/114+33110785..33116798NADPH-cytochrome P450 reductase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38851.1.A1_s_at--447--1771Chr04:33092530..33092554 (25 bp)
ACCTGTCTTTGCATCATCTATTGGT
LOC_Os04g55930
Os.38851.1.A1_s_at--1120--3871Chr04:33092528..33092552 (25 bp)
CTGTCTTTGCATCATCTATTGGTTT
LOC_Os04g55930
Os.38851.1.A1_s_at--120--7151Chr04:33092526..33092550 (25 bp)
GTCTTTGCATCATCTATTGGTTTAG
LOC_Os04g55930
Os.38851.1.A1_s_at--147--10271Chr04:33092523..33092547 (25 bp)
TTTGCATCATCTATTGGTTTAGGTA
LOC_Os04g55930
Os.38851.1.A1_s_at--923--8711Chr04:33092364..33092388 (25 bp)
TGTCGGTCATGGGATCTCGCTTCAA
LOC_Os04g55930
Os.38851.1.A1_s_at--881--7191Chr04:33092363..33092387 (25 bp)
GTCGGTCATGGGATCTCGCTTCAAG
LOC_Os04g55930
Os.38851.1.A1_s_at--923--9431Chr04:33092362..33092386 (25 bp)
TCGGTCATGGGATCTCGCTTCAAGA
LOC_Os04g55930
Os.38851.1.A1_s_at--236--451Chr04:33092351..33092375 (25 bp)
ATCTCGCTTCAAGAAGTCCGGGAAG
LOC_Os04g55930
Os.38851.1.A1_s_at--811--3791Chr04:33092349..33092373 (25 bp)
CTCGCTTCAAGAAGTCCGGGAAGAT
LOC_Os04g55930
Os.38851.1.A1_s_at--337--5331Chr04:33092339..33092363 (25 bp)
GAAGTCCGGGAAGATATTCCCAGCT
LOC_Os04g55930
Os.38851.1.A1_s_at--719--1111Chr04:33092337..33092361 (25 bp)
AGTCCGGGAAGATATTCCCAGCTGG
LOC_Os04g55930
Target Sequence 
ACCTGTCTTTGCATCATCTATTGGTTTAGGTANATCGGCTGCCCTNTTGTCGGTCATGGGATCTCGCTTCAAGAAGTCCG
GGAAGATATTCCCAGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38851.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis