Browse Element(s) Details


Os.39294.1.S1_at

Description gb:AK111541.1
DB_XREF= gi:37988204
TID=Os.39294.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.39294 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038H19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038H19, full insert sequence.
FL= gb:AK111541.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2954011/11Protein kinase domain containing protein, expressed
LOC_Os09g295602/11Calcium binding EGF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29500NANA9+17942680..17945479retrotransposon protein, putative, unclassified
LOC_Os09g29510OsAffx.30080.1.S1_at11/119+17948935..17953034Protein kinase domain containing protein, expressed
LOC_Os09g29520Os.51022.1.A1_at11/119+17960168..17961784wall-associated kinase 3, putative, expressed
LOC_Os09g29530NANA9+17965322..17965573hypothetical protein
LOC_Os09g29540Os.39294.1.S1_at11/119+17967401..17970303Protein kinase domain containing protein, expressed
LOC_Os09g29550Os.4183.1.S1_a_at1/119+17973076..17973300hypothetical protein
LOC_Os09g29560Os.39294.1.S1_at2/119+17975722..17978389Calcium binding EGF domain containing protein
LOC_Os09g29570NANA9+17980772..17983335hypothetical protein
LOC_Os09g29584Os.49892.1.S1_at11/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.6442.1.S1_s_at11/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.6442.1.S1_at8/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.53217.1.S1_x_at3/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.9332.2.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.7337.1.S1_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.43567.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584OsAffx.1353.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed
LOC_Os09g29584Os.38172.1.S1_x_at1/119+17986176..17995612wall-associated kinase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39294.1.S1_at--892--7071Chr09:17967947..17967971 (25 bp)
GTCAATGAGGTTTCTCTCAGCTATG
LOC_Os09g29540
Os.39294.1.S1_at--735--7832Chr09:17975848..17975872 (25 bp)
GGTAATGCAACACCCATGGACGCAA
LOC_Os09g29560
Os.39294.1.S1_at--1037--2691Chr09:17967683..17967707 (25 bp)
AAGCTCAGGAGCCTCGAGTACAGGA
LOC_Os09g29540
Os.39294.1.S1_at--734--7072Chr09:17975724..17975748 (25 bp)
GTCAAGGACCTAGCATCAGGGCGTT
LOC_Os09g29560
Os.39294.1.S1_at--1096--9612Chr09:17975709..17975733 (25 bp)
TCAGGGCGTTAAGCTGGAATCTCTT
NONE
Os.39294.1.S1_at--794--8511Chr09:17967605..17967629 (25 bp)
TGGAATCTCTTTGCTACCCAGCATA
LOC_Os09g29540
Os.39294.1.S1_at--1012--9952Chr09:17967591..17967615 (25 bp)
TACCCAGCATACATCATATCACCAT
LOC_Os09g29540
Os.39294.1.S1_at--110--251Chr09:17967576..17967600 (25 bp)
ATATCACCATATCATACCGCGTCAT
LOC_Os09g29540
Os.39294.1.S1_at--1161--6852Chr09:17975638..17975662 (25 bp)
GTATCATAGTTTTCACTTACCCTAG
NONE
Os.39294.1.S1_at--111--10252Chr09:17975552..17975576 (25 bp)
TTTGTGTACACCTTTAGTCTTTATG
NONE
Os.39294.1.S1_at--308--7151Chr09:17967446..17967470 (25 bp)
GTCTTTATGGGACTATGTTTCATCA
LOC_Os09g29540
Target Sequence 
GTCAATGAGGTTTCTCTCAGCTATGAAGGAGAACAAGCTTGAGAATATATTGGACGATCAAATTAGCAATGAAGAGAACA
TGGAGTTTCTCGAAGAAGTTGTAGATTTAGCAAAGCAATGCTTGGCAATGTGTGGTGAGGATAGACCATCCATGAAGAAA
GTTGCGGAGAAGCTCGATAGGCTGGTTAAGGTAATGCAACACCCATGGACGCAACAAAATCCTGAAGAGTTGGAGAGCTT
GCTTGGAGAATCTTCTTACATTATAAGCTCAGGAGCCTCGAGTACAGGAAATTTCAGCATCGAGAAGAAAGTTGTCAAGG
ACCTAGCATCAGGGCGTTAAGCTGGAATCTCTTTGCTACCCAGCATACATCATATCACCATATCATACCGCGTCATATTG
TATCATAGTTTTCACTTACCCTAGAAATTCAGACTCAGTTATGTTCATTATTAAAAAAATTTTGTGTAAAAATAAAAAAA
TATTGTTTGTGTACACCTTTAGTCTTTATGGGACTATGTTTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39294.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis