Browse Element(s) Details


Os.39576.1.A1_s_at

Description gb:CR283115
DB_XREF= gi:44669681
DB_XREF=CR283115
CLONE=y784b04p3
TID=Os.39576.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.39576 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0224011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02180Os.16138.1.S1_s_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02180OsAffx.12708.1.S1_x_at11/113+704561..706349Cytochrome P450 84A1, putative, expressed
LOC_Os03g02190Os.50750.1.S1_at11/113+710833..712592Protein kinase domain containing protein, expressed
LOC_Os03g02200Os.2298.1.S1_at11/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02200OsAffx.31822.1.A1_at3/113+714528..718122Thymidine kinase, putative, expressed
LOC_Os03g02210Os.56285.1.S1_at11/113+718729..721497F-box domain containing protein, expressed
LOC_Os03g02230NANA3+722557..723153hypothetical protein
LOC_Os03g02240Os.39576.1.A1_s_at11/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.24964.3.S1_x_at1/113+730369..734080expressed protein
LOC_Os03g02240OsAffx.2477.1.S1_x_at1/113+730369..734080expressed protein
LOC_Os03g02260Os.6308.1.S1_at11/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02260OsAffx.31396.1.S1_at1/113+745105..749602Heat shock 70 kDa protein, mitochondrial precursor, putative, expressed
LOC_Os03g02270Os.52254.1.S1_at11/113+749790..755437expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39576.1.A1_s_at--716--3711Chr03:730936..730960 (25 bp)
CTAGCCATCCACTTGCATTCTTTAA
LOC_Os03g02240
Os.39576.1.A1_s_at--769--9051Chr03:730923..730947 (25 bp)
TGCATTCTTTAACTCCTACAACTAC
LOC_Os03g02240
Os.39576.1.A1_s_at--1017--3711Chr03:730908..730932 (25 bp)
CTACAACTACACTATATCGATCCCT
LOC_Os03g02240
Os.39576.1.A1_s_at--323--6371Chr03:730890..730914 (25 bp)
GATCCCTAGTTAGCATAAGCTCGTT
LOC_Os03g02240
Os.39576.1.A1_s_at--567--6551Chr03:730829..730853 (25 bp)
GATTCCAAGTTCCAACAACCTGATC
LOC_Os03g02240
Os.39576.1.A1_s_at--598--191Chr03:730807..730831 (25 bp)
ATCTTTTCCGTATATTTCTTCTCCT
LOC_Os03g02240
Os.39576.1.A1_s_at--889--331Chr03:730753..730777 (25 bp)
ATACACCTTGTACATGTCACACACT
LOC_Os03g02240
Os.39576.1.A1_s_at--32--4031Chr03:730612..730636 (25 bp)
CGTAGGTACATGTCTGTTTTTCTCT
LOC_Os03g02240
Os.39576.1.A1_s_at--596--6871Chr03:730579..730603 (25 bp)
GTATTAACAGTCCAGTGCTCAAGTA
LOC_Os03g02240
Os.39576.1.A1_s_at--992--2791Chr03:730559..730583 (25 bp)
AAGTACTACAAGCTACGGCAACCGA
LOC_Os03g02240
Os.39576.1.A1_s_at--700--10811Chr03:730502..730526 (25 bp)
TTGGGTATACTTTCGGATGTTCTTT
LOC_Os03g02240
Target Sequence 
CTAGCCATCCACTTGCATTCTTTAACTCCTACAACTACACTATATCGATCCCTAGTTAGCATAAGCTCGTTAAAACCTGA
AGGNCCAAAATTTACTGTTCCTNGCCTAGATTCCAAGTTCCAACAACCTGATCTTTTCCGTATATTTCTTCTCCTTTCCT
GCACATAACATTATTTATCGTCGTATACACCTTGTACATGTCACACACTCACCATGTCCATACAAACATAAATGGTATTG
GGGGACCTCCTGGAGGGAGAGATCTAGCTAGAGAGAAGATAAAAAGGAGGTGAGATATCTTTGTACATGTGAAGGGTTTT
GCGTACGTAGGTACATGTCTGTTTTTCTCTTTAGTGCTGTATTAACAGTCCAGTGCTCAAGTACTACAAGCTACGGCAAC
CGAGAGAAAGGCATGCATGATCATGCTTCTTTTTTTTGGGTATACTTTCGGATGTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39576.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis