Browse Element(s) Details


Os.39652.1.S1_at

Description gb:CB667155
DB_XREF= gi:29670880
DB_XREF=OSJNEd14F19.r
CLONE=OSJNEd14F19
TID=Os.39652.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39652 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_174236.1 (A.thaliana) auxin-induced protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3733011/11auxin induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37280Os.8278.1.S1_at10/119+21537399..21542468MaoC like domain containing protein, expressed
LOC_Os09g37290OsAffx.30166.1.S1_at11/119+21543393..21543697hypothetical protein
LOC_Os09g37300Os.50458.1.S1_at11/119+21543867..21546744Sodium/hydrogen exchanger family protein, expressed
LOC_Os09g37300OsAffx.11114.1.S1_x_at1/119+21543867..21546744Sodium/hydrogen exchanger family protein, expressed
LOC_Os09g37300OsAffx.11114.1.S1_at1/119+21543867..21546744Sodium/hydrogen exchanger family protein, expressed
LOC_Os09g37310OsAffx.382.1.S1_at2/119+21550279..21556824retrotransposon protein, putative, unclassified
LOC_Os09g37310OsAffx.21756.1.S1_at1/119+21550279..21556824retrotransposon protein, putative, unclassified
LOC_Os09g37320NANA9+21558741..21563666retrotransposon protein, putative, unclassified
LOC_Os09g37330Os.39652.1.S1_at11/119+21565259..21565999auxin induced protein, putative, expressed
LOC_Os09g37340NANA9+21567180..21567572hypothetical protein
LOC_Os09g37350NANA9+21568985..21569401auxin induced protein, putative, expressed
LOC_Os09g37360OsAffx.18026.1.S1_at11/119+21574181..21575278Pectinesterase family protein
LOC_Os09g37370OsAffx.30170.1.S1_at2/119+21577085..21577429hypothetical protein
LOC_Os09g37380OsAffx.30167.1.S1_at11/119+21579431..21579853auxin induced protein, putative
LOC_Os09g37390Os.51408.1.S1_at2/119+21581849..21584041Auxin responsive protein
LOC_Os09g37390OsAffx.25944.1.S1_at2/119+21581849..21584041Auxin responsive protein
LOC_Os09g37400NANA9+21585648..21586149auxin induced protein, putative, expressed
LOC_Os09g37410OsAffx.30169.1.S1_at1/119+21589997..21590419auxin induced protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39652.1.S1_at--908--5531Chr09:21565834..21565858 (25 bp)
GAAACACACCATGATCAATCCTAAG
LOC_Os09g37330
Os.39652.1.S1_at--684--2771Chr09:21565812..21565836 (25 bp)
AAGAGGCTAGTTCACCTGGCAAAGA
LOC_Os09g37330
Os.39652.1.S1_at--323--5331Chr09:21565789..21565813 (25 bp)
GAAGTGGCAACATATGGCAGCTCTT
LOC_Os09g37330
Os.39652.1.S1_at--274--2331Chr09:21565731..21565755 (25 bp)
AAAGAAGGCAACCTACGCTGCTCAT
LOC_Os09g37330
Os.39652.1.S1_at--699--9091Chr09:21565713..21565737 (25 bp)
TGCTCATCAGCCATCGCAGATAAGG
LOC_Os09g37330
Os.39652.1.S1_at--7--6471Chr09:21565695..21565719 (25 bp)
GATAAGGGCCACTGCATCATCTATA
LOC_Os09g37330
Os.39652.1.S1_at--227--2211Chr09:21565626..21565650 (25 bp)
ACAACTGTGTTTGGCGAACTCCTAA
LOC_Os09g37330
Os.39652.1.S1_at--486--6451Chr09:21565561..21565585 (25 bp)
GATCACACTTCCTTGTGAGGCAGCA
LOC_Os09g37330
Os.39652.1.S1_at--809--2491Chr09:21565484..21565508 (25 bp)
AACAGGCTGTTGTGAGCTCTGTCGT
LOC_Os09g37330
Os.39652.1.S1_at--1055--5891Chr09:21565471..21565495 (25 bp)
GAGCTCTGTCGTAATGCCATGTAAT
LOC_Os09g37330
Os.39652.1.S1_at--590--3451Chr09:21565421..21565445 (25 bp)
CAGTCAATCTTAGCCAGTCACTAGC
LOC_Os09g37330
Target Sequence 
GAAACACACCATGATCAATCCTAAGAGGCTAGTTCACCTGGCAAAGAAGTGGCAACATATGGCAGCTCTTGGGAGGCGGA
GGCTGACGATAACGGGAGCAACTAAAGAAGGCAACCTACGCTGCTCATCAGCCATCGCAGATAAGGGCCACTGCATCATC
TATACAGCTGATGGAGAGCGATTTGGGGTTCCATTGACATATCTGAGTACAACTGTGTTTGGCGAACTCCTAAGGTTGTC
TGAGGATGAATTTGGATTCACAGGTGAGGAAAAGATCACACTTCCTTGTGAGGCAGCAGTGATGGAGTATGTGATGTGCT
TGCTTAGGAGAAAGCCCTCGGAAGAGGTGGAACAGGCTGTTGTGAGCTCTGTCGTAATGCCATGTAATTACAAGAGTAGC
ACTAGCATGGTTTNCAGTCAATCTTAGCCAGTCACTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis