Browse Element(s) Details


Os.39814.1.S1_at

Description gb:NM_193848.1
DB_XREF= gi:34914779
GEN=B1039D07.13
TID=Os.39814.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.39814 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1039D07.13 (B1039D07.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1039D07.13 (B1039D07.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g148893/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g238601/11hypothetical protein
LOC_Os01g412101/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14814Os.8788.1.S1_at6/1110+7516535..7522112Riboflavin kinase/FAD synthetase family protein
LOC_Os10g14814Os.20353.1.S2_at4/1110+7516535..7522112Riboflavin kinase/FAD synthetase family protein
LOC_Os10g14830NANA10+7526009..7526596retrotransposon protein, putative, unclassified
LOC_Os10g14840NANA10+7526991..7528088hypothetical protein
LOC_Os10g14850OsAffx.15708.1.S1_at1/1110+7529548..7530778hypothetical protein
LOC_Os10g14860OsAffx.21779.1.S1_at11/1110+7532524..7534123retrotransposon protein, putative, unclassified
LOC_Os10g14860OsAffx.21779.3.S1_at2/1110+7532524..7534123retrotransposon protein, putative, unclassified
LOC_Os10g14870Os.5438.1.S1_at11/1110+7534704..7536767heavy metal-associated domain containing protein, expressed
LOC_Os10g14880OsAffx.303.1.S1_at11/1110+7538556..7538897retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g14889Os.41248.2.A1_at4/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14889Os.39814.1.S1_at3/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14889Os.41248.5.S1_x_at1/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14900OsAffx.302.1.S1_at11/1110+7552652..7553059retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g14920Os.18714.1.S2_at11/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14920Os.18714.1.S1_a_at11/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14920OsAffx.28912.1.S1_at1/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39814.1.S1_at--862--4275Chr11:12420649..12420668 (20 bp)
CCTCTTAAGTTTCATCCCATTTCAT
NONE
Os.39814.1.S1_at--911--472Chr02:14829837..14829861 (25 bp)
ATCGGGACATCGTCTTCGTTGCCGT
NONE
Os.39814.1.S1_at--1072--10612Chr08:7179234..7179261 (23 bp)
TTCGTTGCCGTCGAACCGGAGCAAG
NONE
Os.39814.1.S1_at--1144--453Chr11:12420798..12420822 (25 bp)
ATCTCCTCGGTGTCCTCTCTTAAAT
NONE
Os.39814.1.S1_at--224--8992Chr10:7545527..7545551 (25 bp)
TGAACCCCTGCCAGTGGTGCAGCGA
LOC_Os10g14889
Os.39814.1.S1_at--286--8053Chr11:12420858..12420882 (25 bp)
GGAGATCGGCATCGTCTTCCCCAAT
NONE
Os.39814.1.S1_at--808--414Chr11:12420999..12421022 (24 bp)
ATCATCAGCCATATCAAGCCGGCGT
NONE
Os.39814.1.S1_at--460--2834Chr11:12421092..12421203 (25 bp)
AAGTTTCATTGGACGCTCGAACCAC
NONE
Os.39814.1.S1_at--364--7235Chr05:12061323..12061347 (25 bp)
GTCGCCATTAATTCCGATGACCAAT
NONE
Os.39814.1.S1_at--478--5111Chr01:15658975..15658999 (25 bp)
GCAAAAATACCACCTATAGCCTCGC
NONE
Os.39814.1.S1_at--121--10351Chr01:15658933..15658957 (25 bp)
TTTATCCTTATGTTGCACACCGAGA
NONE
Target Sequence 
CCTCTTAAGTTTCATCCCATTTCATGCAGTGGTTTGGTGGGAACGCAAACCTCGCCGACGATGCTCNGGAGCGCGCACTG
GGCGCCGCCATCGGGACATCGTCTTCGTTGCCGTCGAACCGGAGCAAGCCGAGCCGAGCCACCGCACCATCAACATCTCC
TCGGTGTCCTCTCTTAAATCCCTCATGAACCCCTGCCAGTGGTGCAGCGAGCTTGGAGATCGGCATCGTCTTCCCCAATT
CCGGCCGTCAAGCTCCACCTTCGATTTCTCCCTCTCCGATCATCAGCCATATCAAGCCGGCGTCGTCATCGAGCGAGGCT
CCCTGCCGTCGCCGAGTCGTTCTGCTCGTGGTCATCGCTATCTGGACCTCGCCAAGTTTCATTGGACGCTCGAACCACCG
CCGCTCGCGCCGCCGTCGCCATTAATTCCGATGACCAATGCTTGCAAAAATACCACCTATAGCCTCGCCTTGAACCCCTT
TACATTTTATCCTTATGTTGCACACCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis