Browse Element(s) Details


Os.39944.1.S1_at

Description gb:CB679774
DB_XREF= gi:29683499
DB_XREF=OSJNEf03K22.r
CLONE=OSJNEf03K22
TID=Os.39944.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39944 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_193735.1 (A.thaliana) DAG-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1102011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g10980Os.9996.2.S1_at11/1111+6054813..6061259pyruvate kinase family protein, expressed
LOC_Os11g10990Os.9996.1.S1_at11/1111+6060779..6062265DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os11g11000Os.11947.1.S1_a_at10/1111+6063705..6069244ABC1 family protein, expressed
LOC_Os11g11010OsAffx.30923.1.S1_at10/1111+6070865..6072074hypothetical protein
LOC_Os11g11020Os.39944.1.S1_at11/1111+6083465..6086950expressed protein
LOC_Os11g11030OsAffx.18793.1.S1_at11/1111+6087707..6088042hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.3.S1_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_x_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11050Os.12719.2.S1_at11/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.12719.1.S1_at10/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.26865.1.S1_at1/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11060Os.53099.1.S1_at11/1111+6105046..6109195GHMP kinases putative ATP-binding protein, expressed
LOC_Os11g11060Os.38770.1.S1_at3/1111+6105046..6109195GHMP kinases putative ATP-binding protein, expressed
LOC_Os11g11070Os.25108.1.S1_at11/1111+6110262..6119394mRNA capping enzyme, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39944.1.S1_at--184--10531Chr11:6084511..6084535 (25 bp)
TTCAGCGCCTGGAACTTATGGTCAA
LOC_Os11g11020
Os.39944.1.S1_at--377--4791Chr11:6084423..6084447 (25 bp)
GCTCCTGGTGTAAATCCTGGTTATG
LOC_Os11g11020
Os.39944.1.S1_at--799--7671Chr11:6084343..6084367 (25 bp)
GGGTTCTAATCAGTATCCTAGCCAA
LOC_Os11g11020
Os.39944.1.S1_at--1118--9811Chr11:6083793..6083817 (25 bp)
TAACATGTGTTCCAGTCACGGACGA
LOC_Os11g11020
Os.39944.1.S1_at--835--6951Chr11:6083742..6083766 (25 bp)
GTAGAAACTCCCACCTGTACAATAA
LOC_Os11g11020
Os.39944.1.S1_at--129--5731Chr11:6083715..6083739 (25 bp)
GACTGCGCTGCTTTACTATTTCTTG
LOC_Os11g11020
Os.39944.1.S1_at--341--3691Chr11:6083700..6083724 (25 bp)
CTATTTCTTGCTGCTTGCATTCATG
LOC_Os11g11020
Os.39944.1.S1_at--863--691Chr11:6083666..6083690 (25 bp)
ATGAGCTAAGCCTAGTACCAACAGT
LOC_Os11g11020
Os.39944.1.S1_at--768--7131Chr11:6083598..6083622 (25 bp)
GTCATTTACATCACAAGGGCTCTTC
LOC_Os11g11020
Os.39944.1.S1_at--531--51Chr11:6083540..6083564 (25 bp)
ATTGAATCGTGGCATCGGCCTACAG
LOC_Os11g11020
Os.39944.1.S1_at--383--8431Chr11:6083524..6083548 (25 bp)
GGCCTACAGTTGCTAGTTCCCAGAA
LOC_Os11g11020
Target Sequence 
TTCAGCGCCTGGAACTTATGGTCAACCACCAGCACCTGGAAATTATGCGCAACNACATCCACCAACTTATCCTGGAAGCA
ACCAAGGNGCTCCTGGTGTAAATCCTGGTTATGGTGGAAACAACAGGCAGGGGCCTGGACCTGCATATGGAGGAGATAAC
TGGCAAGGGGGTTCTAATCAGTATCCTAGCCAAAGCGAAGGACAACAAGAGAGCTGGCGGGGAAGGCAATAAGGGCTTTA
ACATGTGTTCCAGTCACGGACGAGAGGGCATAATTATGCTGCTTGAAATGTAGAAACTCCCACCTGTACAATAAANGACT
GCGCTGCTTTACTATTTCTTGCTGCTTGCATTCATGTTCTGAAGAATGAGCTAAGCCTAGTACCAACAGTNTAAATGGAT
GCAGACATTAATTTTGTTGTTNTTAGCCATATTGTCATTTACATCACAAGGGCTCTTCATTTTTAATGATTGGCATGNGT
GTCTATCACTAATTGAATCGTGGCATCGGCCTACAGTTGCTAGTTCCCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis