Browse Element(s) Details


Os.39960.1.S1_at

Description gb:AU165037
DB_XREF= gi:11414244
DB_XREF=AU165037
CLONE=Osic58
TID=Os.39960.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39960 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g148501/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14820OsAffx.29204.1.S1_at10/118+8912271..8913306hypothetical protein
LOC_Os08g14830OsAffx.29205.1.S1_at11/118+8916550..8920029NB-ARC domain containing protein
LOC_Os08g14840OsAffx.29206.1.S1_at11/118+8928261..8928875hypothetical protein
LOC_Os08g14850Os.53682.1.S1_at11/118+8933157..8946745NB-ARC domain containing protein, expressed
LOC_Os08g14850Os.39960.1.S1_at1/118+8933157..8946745NB-ARC domain containing protein, expressed
LOC_Os08g14860Os.15199.1.S1_at11/118+8948951..8953293Ubiquinol-cytochrome c reductase complex 14 kDa protein, putative, expressed
LOC_Os08g14870OsAffx.29207.2.S1_at11/118+8957450..8957785hypothetical protein
LOC_Os08g14870OsAffx.29207.1.S1_x_at1/118+8957450..8957785hypothetical protein
LOC_Os08g14880Os.21862.1.S1_at11/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14880Os.35093.1.A1_x_at3/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14880OsAffx.29842.3.S1_x_at1/118+8961431..8964607transposon protein, putative, unclassified, expressed
LOC_Os08g14890OsAffx.5818.1.S1_at11/118+8968896..8970845expressed protein
LOC_Os08g14900NANA8+8971186..8972365expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39960.1.S1_at--59--3151Chr08:5021251..5021275 (25 bp)
AATTCACTGGGTTTCGACTTCGTCT
NONE
Os.39960.1.S1_at--75--1951Chr08:5021289..5021313 (25 bp)
ACGGCCTTTCACTCCAATTGGTTAT
NONE
Os.39960.1.S1_at--174--8571NONE
TGGTTATTTTTCTGAGGCCGTCGAT
NONE
Os.39960.1.S1_at--1051--872Chr08:5022638..5022662 (25 bp)
AGGCCGTCGATTCCGCTTTAAGATT
NONE
Os.39960.1.S1_at--810--6514Chr08:5622116..5622140 (25 bp)
GATATTTTGCTACCGGATCTAAACC
NONE
Os.39960.1.S1_at--142--4510Chr11:7974792..7974816 (25 bp)
ATCTAAACCCTCTTTTCACAAGCTA
NONE
Os.39960.1.S1_at--1088--3292Chr08:5022703..5022727 (25 bp)
CACAAGCTAGCCACATCATCATATG
NONE
Os.39960.1.S1_at--239--6831Chr08:5023253..5023277 (25 bp)
GTTTCGGAACAAGGTTTTAGCCATG
NONE
Os.39960.1.S1_at--495--9991Chr08:5023270..5023294 (25 bp)
TAGCCATGAGGATCCATTGCAGTCT
NONE
Os.39960.1.S1_at--259--71Chr08:5023285..5023309 (25 bp)
ATTGCAGTCTCTGCCAAACTGGCTT
NONE
Os.39960.1.S1_at--549--7151Chr08:5023463..5023487 (25 bp)
GTCTTTTAGACTACCGAGGATATCC
NONE
Target Sequence 
AATTCACTGGGTTTCGACTTCGTCTCCTCATCGTCGAAACGGCCTTTCACTCCAATTGGTTATTTTTCTGAGGCCGTCGA
TTCCGCTTTAAGATTTGTGCTGAGATATTTTGCTACCGGATCTAAACCCTCTTTTCACAAGCTAGCCACATCATCATATG
TTTATGGAACAAGGTTTCGGAACAAGGTTTTAGCCATGAGGATCCATTGCAGTCTCTGCCAAACTGGCTTCCCGACGGGG
ATGAAAAGANNNNNNAGTTCGAGTAGGCCNNTNGTGGTNATCTTATTATCCGTTGNTNGGCTTANNNCAGACAANNNTTT
AATTTTAAATATTACTTTTGAGTTAATTTTTGAGAATTNGNATTGCTGTTTGTATTTCAATCTTGTCTTTTAGACTACCG
AGGATATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis