Browse Element(s) Details

Os.39973.1.S1_s_at

Description

gb:CF311350
DB_XREF= gi:33683111
DB_XREF=ABF--06-I15.g1
CLONE=ABF--06-I15
TID=Os.39973.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.39973 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T47540 (A.thaliana) T47540 actin depolymerizing factor 2 - Arabidopsis thaliana
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g60580	11/11	Actin-depolymerizing factor 4, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g60524	Os.29987.1.S1_at	6/11	3	+	34343696..34344553	transposon protein, putative, unclassified
LOC_Os03g60524	Os.43567.1.S1_x_at	3/11	3	+	34343696..34344553	transposon protein, putative, unclassified
LOC_Os03g60524	Os.38172.1.S1_x_at	2/11	3	+	34343696..34344553	transposon protein, putative, unclassified
LOC_Os03g60530	Os.9042.1.S1_at	10/11	3	+	34346027..34349308	Ras-related protein ARA-3, putative, expressed
LOC_Os03g60540	OsAffx.13562.1.S1_at	11/11	3	+	34349796..34350356	Zinc finger, C2H2 type family protein
LOC_Os03g60550	Os.17427.1.S1_at	11/11	3	+	34351774..34358073	ThiF family protein, expressed
LOC_Os03g60550	OsAffx.25657.1.S1_s_at	1/11	3	+	34351774..34358073	ThiF family protein, expressed
LOC_Os03g60560	Os.28441.1.S1_at	11/11	3	+	34363114..34364034	Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60570	Os.15874.1.A1_at	11/11	3	+	34366638..34367547	Zinc finger, C2H2 type family protein, expressed
LOC_Os03g60580	Os.39973.1.S1_s_at	11/11	3	+	34369405..34370315	Actin-depolymerizing factor 4, putative, expressed
LOC_Os03g60590	Os.12749.1.S1_s_at	11/11	3	+	34370595..34373158	Actin-depolymerizing factor 3, putative, expressed
LOC_Os03g60600	Os.16870.1.A1_at	11/11	3	+	34373945..34377386	Zinc knuckle family protein, expressed
LOC_Os03g60610	Os.7166.1.S1_at	11/11	3	+	34378288..34383367	CRAL/TRIO domain containing protein, expressed
LOC_Os03g60620	Os.11822.1.S1_at	11/11	3	+	34385257..34389873	Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60620	OsAffx.29152.1.S1_s_at	1/11	3	+	34385257..34389873	Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os03g60630	OsAffx.3658.1.S1_at	11/11	3	+	34394469..34395536	Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0007015	biological_process	actin filament organization
GO:0005622	cellular_component	intracellular
GO:0005739	cellular_component	mitochondrion
GO:0003779	molecular_function	actin binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.39973.1.S1_s_at--448--699	1	Chr03:34370020..34370044 (25 bp)	GTACGCGAGCTCCAACGAAGGGTTC	LOC_Os03g60580
Os.39973.1.S1_s_at--700--461	1	Chr03:34370024..34370048 (25 bp)	GCGAGCTCCAACGAAGGGTTCAAGA	LOC_Os03g60580
Os.39973.1.S1_s_at--597--291	1	Chr03:34370117..34370141 (25 bp)	AAGGACCACACCTCCTAATTAATCA	LOC_Os03g60580
Os.39973.1.S1_s_at--737--1045	1	Chr03:34370135..34370159 (25 bp)	TTAATCACGCCGTTAATTACCTCGA	LOC_Os03g60580
Os.39973.1.S1_s_at--306--967	1	Chr03:34370139..34370163 (25 bp)	TCACGCCGTTAATTACCTCGATTTT	LOC_Os03g60580
Os.39973.1.S1_s_at--819--417	1	Chr03:34370152..34370176 (25 bp)	TACCTCGATTTTCCAAGTAATTACG	LOC_Os03g60580
Os.39973.1.S1_s_at--1106--283	1	Chr03:34370166..34370190 (25 bp)	AAGTAATTACGTTGGCATTGCAGCC	LOC_Os03g60580
Os.39973.1.S1_s_at--392--661	1	Chr03:34370176..34370200 (25 bp)	GTTGGCATTGCAGCCCATGTGTATG	LOC_Os03g60580
Os.39973.1.S1_s_at--485--993	1	Chr03:34370210..34370234 (25 bp)	TACGGCTTGCTTGGTGTTTGGATTG	LOC_Os03g60580
Os.39973.1.S1_s_at--896--361	1	Chr03:34370219..34370243 (25 bp)	CTTGGTGTTTGGATTGTGTACGTGT	LOC_Os03g60580
Os.39973.1.S1_s_at--771--699	1	Chr03:34370236..34370260 (25 bp)	GTACGTGTGTGGTTAATTTACATTA	LOC_Os03g60580

Target Sequence

GTACGCGAGCTCCAACGAAGGGTTCAAGAAGGAGCTCGACGGCGTCCAGATCGACCTGCAGGCCACCGACCCCAGCGAGC
TCACCCTCGACGTGCTCAAGGACCACACCTCCTAATTAATCACGCCGTTAATTACCTCGATTTTCCAAGTAATTACGTTG
GCATTGCAGCCCATGTGTATGTGTGGTTTGTACGGCTTGCTTGGTGTTTGGATTGTGTACGTGTGTGGTTAATTTACATT
A

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis