Browse Element(s) Details


Os.40020.1.S1_a_at

Description gb:AY344490.1
DB_XREF= gi:33591109
TID=Os.40020.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40020 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) heat shock factor RHSF8 mRNA, complete cds.
PROD=heat shock factor RHSF8
FL= gb:AY344490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1237011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12350Os.11949.1.S1_at11/113+6491886..6497626myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os03g12360Os.23237.1.S1_at11/113+6498169..6501558Trehalose-6-phosphate synthase, putative, expressed
LOC_Os03g12370Os.40020.1.S1_a_at11/113+6516688..6520514HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g12380OsAffx.3208.1.S1_at11/113+6520726..6521028hypothetical protein
LOC_Os03g12390Os.16872.1.S1_at11/113+6524266..6525593Protein kinase domain containing protein, expressed
LOC_Os03g12400NANA3+6526482..6526790transposon protein, putative, unclassified
LOC_Os03g12414Os.33798.2.S1_x_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414Os.33798.1.S1_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414OsAffx.4970.1.S1_at1/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12430Os.37638.1.S1_at11/113+6542507..6544334pentatricopeptide, putative, expressed
LOC_Os03g12440OsAffx.22281.1.S1_at11/113+6545264..6549318hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40020.1.S1_a_at--389--3531Chr03:6518866..6518890 (25 bp)
CATGCTCTTGAGCAGGGCCCTGTAA
LOC_Os03g12370
Os.40020.1.S1_a_at--164--2571Chr03:6518889..6518913 (25 bp)
AACTGATCAGGAGACCTCTGGCCGT
LOC_Os03g12370
Os.40020.1.S1_a_at--675--10231Chr03:6518922..6518946 (25 bp)
TATTGTTGAATATCTCCCACCTGTC
LOC_Os03g12370
Os.40020.1.S1_a_at--366--5291Chr03:6518977..6519001 (25 bp)
GAAGGAGCCATTTGTTCGGCCAACT
LOC_Os03g12370
Os.40020.1.S1_a_at--488--2211Chr03:6519003..6519027 (25 bp)
ACAACCAGTTCCAAGTCCTGCAGTT
LOC_Os03g12370
Os.40020.1.S1_a_at--55--9811Chr03:6519054..6519078 (25 bp)
TAACGTTGCTGATACTCTCGGTTCA
LOC_Os03g12370
Os.40020.1.S1_a_at--462--971Chr03:6519083..6519107 (25 bp)
AGGAGCCTTTCGCTGATAACTCTAC
LOC_Os03g12370
Os.40020.1.S1_a_at--587--6291Chr03:6519121..6519145 (25 bp)
GATGATAACGACATGCAGCTTCTGT
LOC_Os03g12370
Os.40020.1.S1_a_at--862--2991Chr03:6519184..6519208 (25 bp)
AATGATGGTCAAATGGGCCCTCCTT
LOC_Os03g12370
Os.40020.1.S1_a_at--434--8411Chr03:6519199..6519223 (25 bp)
GGCCCTCCTTTGAGTGTTCAAGATT
LOC_Os03g12370
Os.40020.1.S1_a_at--240--6551Chr03:6519220..6519244 (25 bp)
GATTATGATTTTCCGCAGTTAGAGC
LOC_Os03g12370
Target Sequence 
CATGCTCTTGAGCAGGGCCCTGTAACTGATCAGGAGACCTCTGGCCGTGGGGCACATATTGTTGAATATCTCCCACCTGT
CCCAGAAACATCAGGTCAAGTAAATCCAGTGGAAGGAGCCATTTGTTCGGCCAACTCACAACCAGTTCCAAGTCCTGCAG
TTGCCACACCCATGGACATGCAAACGTCTAACGTTGCTGATACTCTCGGTTCATCTGAGGAGCCTTTCGCTGATAACTCT
ACTCTACATGAATGGGATGATAACGACATGCAGCTTCTGTTTGATGATAACCTAGACCCAATACTTCCACCATTTGAGAA
TGATGGTCAAATGGGCCCTCCTTTGAGTGTTCAAGATTATGATTTTCCGCAGTTAGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40020.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis