Browse Element(s) Details


Os.40030.1.S1_s_at

Description gb:BI813408
DB_XREF= gi:16579313
DB_XREF=K005H04
CLONE=K005H04
TID=Os.40030.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.40030 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564709.1 (A.thaliana) predicted protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g164208/11SHR5-receptor-like kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16400OsAffx.19421.1.S1_at3/115+9279739..9286058transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g16410OsAffx.11392.3.S1_at11/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.11392.2.S1_x_at4/115+9289946..9293114hypothetical protein
LOC_Os05g16410Os.27004.1.A1_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.25352.1.S1_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.30367.1.S1_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.25984.1.S1_x_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16410OsAffx.25984.1.S1_at1/115+9289946..9293114hypothetical protein
LOC_Os05g16420Os.40030.1.S1_s_at8/115+9297346..9297847SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16430Os.27474.1.S1_at9/115+9301003..9307448SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16430Os.53142.1.S1_at3/115+9301003..9307448SHR5-receptor-like kinase, putative, expressed
LOC_Os05g16440NANA5+9316009..9316578hypothetical protein
LOC_Os05g16450OsAffx.26924.2.S1_at11/115+9320240..9320710hypothetical protein
LOC_Os05g16450OsAffx.26924.3.S1_x_at1/115+9320240..9320710hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40030.1.S1_s_at--990--4531Chr05:9297718..9297742 (25 bp)
GCCCTGCAGCGGTGTGGCCTCGGAT
LOC_Os05g16420
Os.40030.1.S1_s_at--273--8651Chr05:9297730..9297754 (25 bp)
TGTGGCCTCGGATCCGAGCAACTGG
LOC_Os05g16420
Os.40030.1.S1_s_at--585--4291Chr05:9297735..9297759 (25 bp)
CCTCGGATCCGAGCAACTGGGATAA
LOC_Os05g16420
Os.40030.1.S1_s_at--112--9151Chr05:9297788..9297812 (25 bp)
TGCGCTTGCACTTACTACAACAACA
LOC_Os05g16420
Os.40030.1.S1_s_at--78--3631Chr05:9297792..9297816 (25 bp)
CTTGCACTTACTACAACAACACCGT
LOC_Os05g16420
Os.40030.1.S1_s_at--331--3311Chr05:9297796..9297820 (25 bp)
CACTTACTACAACAACACCGTTTGC
LOC_Os05g16420
Os.40030.1.S1_s_at--1144--2011Chr05:9297801..9297825 (25 bp)
ACTACAACAACACCGTTTGCCACAT
LOC_Os05g16420
Os.40030.1.S1_s_at--658--2131Chr05:9297810..9297834 (25 bp)
ACACCGTTTGCCACATTACCAAACT
LOC_Os05g16420
Os.40030.1.S1_s_at--231--10691NONE
TTGCCACATTACCAAACTACGCTGC
NONE
Os.40030.1.S1_s_at--675--2071NONE
ACATTACCAAACTACGCTGCAGCTT
NONE
Os.40030.1.S1_s_at--1016--131NONE
ATTACCAAACTACGCTGCAGCTTCG
NONE
Target Sequence 
GCCCTGCAGCGGTGTGGCCTCGGATCCGAGCAACTGGGATAACTTCCCCACATCAACCCCCTCATCAAGTGCGCTTGCAC
TTACTACAACAACACCGTTTGCCACATTACCAAACTACGCTGCAGCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40030.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis