Browse Element(s) Details


Os.40189.1.S1_at

Description gb:NM_188184.1
DB_XREF= gi:34903451
GEN=OSJNBa0066B06.3
TID=Os.40189.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0066B06.3 (OSJNBa0066B06.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0066B06.3 (OSJNBa0066B06.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2334011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23290OsAffx.8372.1.S1_at4/117+13121748..13125159transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23290OsAffx.8371.1.S1_at3/117+13121748..13125159transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23300NANA7+13130853..13136998retrotransposon protein, putative, unclassified
LOC_Os07g23310Os.28943.1.S1_x_at1/117+13137445..13140667retrotransposon protein, putative, unclassified
LOC_Os07g23320Os.47130.4.A1_x_at1/117+13141603..13141929retrotransposon protein, putative, unclassified
LOC_Os07g23340Os.51576.1.S1_at11/117+13148097..13150979expressed protein
LOC_Os07g23340Os.40189.1.S1_at11/117+13148097..13150979expressed protein
LOC_Os07g23354OsAffx.30725.3.S1_at11/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23354Os.14491.2.S1_x_at4/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23354OsAffx.30725.5.S1_x_at4/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23354OsAffx.30725.1.S1_at4/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23354Os.47463.1.S1_x_at4/117+13151954..13166338transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23370NANA7+13172720..13174227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23380OsAffx.22166.1.S1_at11/117+13175561..13176776acyl CoA reductase, putative

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Gene Ontology Classification
GO idTypeName
GO:0009556biological_processmicrosporogenesis
GO:0016627molecular_functionoxidoreductase activity, acting on the CH-CH group of donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40189.1.S1_at--648--8771Chr07:13148945..13148969 (25 bp)
TGTATTATCAGCTACCATCCTCAAG
LOC_Os07g23340
Os.40189.1.S1_at--499--8171Chr07:13148921..13148945 (25 bp)
GGAACAGCAGACTTCATCTATCAGA
LOC_Os07g23340
Os.40189.1.S1_at--399--31Chr07:13148897..13148921 (25 bp)
ATTGGTTCTTCCATGAGCAACCCGA
LOC_Os07g23340
Os.40189.1.S1_at--754--2611Chr07:13148879..13148903 (25 bp)
AACCCGATCAAGCTTGGCCAGATGT
LOC_Os07g23340
Os.40189.1.S1_at--341--9351Chr07:13148831..13148855 (25 bp)
TCGCAGATACCATTCGTCGGTGCAA
LOC_Os07g23340
Os.40189.1.S1_at--342--5151Chr07:13148768..13148792 (25 bp)
GCAACAATGGCCAGCTTCTACGAGA
LOC_Os07g23340
Os.40189.1.S1_at--286--271Chr07:13148626..13148650 (25 bp)
ATATGTTGCGCCGTGGGTTATCTAC
LOC_Os07g23340
Os.40189.1.S1_at--37--7891Chr07:13148611..13148635 (25 bp)
GGTTATCTACCACTGAAGACCGTCA
LOC_Os07g23340
Os.40189.1.S1_at--459--8831Chr07:13148559..13148583 (25 bp)
TGATTTTACTGTTGCCGTGGCAGAG
LOC_Os07g23340
Os.40189.1.S1_at--835--5991Chr07:13148368..13148392 (25 bp)
GAGACCGAGAATTGATACCCTGTAA
LOC_Os07g23340
Os.40189.1.S1_at--798--10311Chr07:13148315..13148339 (25 bp)
TTTATGGAAACTCACATCCCCGGTG
LOC_Os07g23340
Target Sequence 
TGTATTATCAGCTACCATCCTCAAGGAACAGCAGACTTCATCTATCAGATTGGTTCTTCCATGAGCAACCCGATCAAGCT
TGGCCAGATGTCTCAAACAACGTACAAATACTTCTCGCAGATACCATTCGTCGGTGCAAAAGGAGATGTAGTCAAGGTGA
AACAACCGAATTTTCTAGCAACAATGGCCAGCTTCTACGAGACCATGGATAAACACTACAAAATGCCTTTGCAGGATATG
TTGCGCCGTGGGTTATCTACCACTGAAGACCGTCATATTTACAACCATCTCAAGAGAGAGTATGATTTTACTGTTGCCGT
GGCAGAGGTATACTGGCCATTCACAATATCCAAAACGAGGTTCGATGACTCGAAAATGCAGAATCTTATGGGAATGGTTA
CTGAAAGAGACCGAGAATTGATACCCTGTAATATAAAGTTCATCAATTGGGACAAGTACTTTATGGAAACTCACATCCCC
GGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis