Browse Element(s) Details


Os.40210.1.S1_at

Description gb:CB645570
DB_XREF= gi:29640561
DB_XREF=OSJNEb07F18.r
CLONE=OSJNEb07F18
TID=Os.40210.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.40210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0592C06.18 (P0592C06.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1216010/112-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12130OsAffx.28408.1.S1_at11/117+6777673..6779818Myb-like DNA-binding domain containing protein
LOC_Os07g12140Os.32977.1.S1_x_at11/117+6789113..6794916DNA-binding protein, putative, expressed
LOC_Os07g12140OsAffx.32241.1.A1_at2/117+6789113..6794916DNA-binding protein, putative, expressed
LOC_Os07g12150Os.14385.1.S1_at11/117+6797286..6798153Acyl carrier protein, mitochondrial precursor, putative, expressed
LOC_Os07g12160Os.40210.1.S1_at10/117+6801713..68048772-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein, expressed
LOC_Os07g12170Os.10276.2.S1_at10/117+6807581..6810987ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12170Os.12389.1.S1_x_at1/117+6807581..6810987ADP-ribosylation factor 1, putative, expressed
LOC_Os07g12180OsAffx.22708.5.S1_x_at7/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.1.S1_x_at6/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.2.S1_x_at6/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12180OsAffx.22708.5.S1_at3/117+6813623..6816373retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12190OsAffx.22708.3.S1_x_at9/117+6817502..6818596retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12190OsAffx.22708.4.S1_x_at8/117+6817502..6818596retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g12200Os.10276.1.S1_at11/117+6821013..6823997ADP-ribosylation factor 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40210.1.S1_at--394--5091Chr07:6804315..6804339 (25 bp)
GCACCCATTTTGCTCGGTATGATTG
LOC_Os07g12160
Os.40210.1.S1_at--317--8851Chr07:6804345..6804369 (25 bp)
TGATGAGCAGTTGTTTTTCCCGGCA
LOC_Os07g12160
Os.40210.1.S1_at--336--8831Chr07:6804370..6804394 (25 bp)
TGATTGACGGCCATTCTCTCTGTGA
LOC_Os07g12160
Os.40210.1.S1_at--515--2271Chr07:6804547..6804571 (25 bp)
AAATCTCCGAGCTAGCTACGACAAG
LOC_Os07g12160
Os.40210.1.S1_at--1089--2211Chr07:6804567..6804591 (25 bp)
ACAAGTGCTGAGTCCATATCTGAGA
LOC_Os07g12160
Os.40210.1.S1_at--777--6091Chr07:6804612..6804636 (25 bp)
GAGTCGCATTTGCATTTGACGAAAT
LOC_Os07g12160
Os.40210.1.S1_at--39--8191Chr07:6804637..6804661 (25 bp)
GGAAGCACCAACATCTTGTCAGTTA
LOC_Os07g12160
Os.40210.1.S1_at--610--9871Chr07:6804703..6804727 (25 bp)
TACAGATCGTGGCACTACGTGGTTT
LOC_Os07g12160
Os.40210.1.S1_at--617--1911Chr07:6804719..6804743 (25 bp)
ACGTGGTTTGCCATCTTTTTGTAGA
LOC_Os07g12160
Os.40210.1.S1_at--799--6931NONE
GTAGATTCAATGCTCCTTAGGTATA
NONE
Os.40210.1.S1_at--217--7851Chr07:6804779..6804803 (25 bp)
GGTACTGTTGTCTCTATAGCTTGTG
LOC_Os07g12160
Target Sequence 
GCACCCATTTTGCTCGGTATGATTGAGCCATGATGAGCAGTTGTTTTTCCCGGCATGATTGACGGCCATTCTCTCTGTGA
TCTGCATGAGGATAGCTCGAGAAGTGATCAAATTCAAGCCCTAACATTATGAGGAATTGAGGATATCTAGAGAAGTAATC
AAGTTCAAGCCCTAGCACTGTGTTCCTCAACAGAAGTCATGGGCACTGGTGGTCTGGCAAAGAAGTGATATAAAATCTCC
GAGCTAGCTACGACAAGTGCTGAGTCCATATCTGAGAACTCAAATGGAAGCAGTGGAGAGTCGCATTTGCATTTGACGAA
ATGGAAGCACCAACATCTTGTCAGTTAATCAGTTACTGTTATGCAGATTGCTAAAAGGAATCTGGAGTTACAGATCGTGG
CACTACGTGGTTTGCCATCTTTTTGTAGATTCAATGCTCCTTAGGTATACTCTCTAATAGAACAGGTACTGTTGTCTCTA
TAGCTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis