Browse Element(s) Details


Os.40269.1.S1_at

Description gb:CF333519
DB_XREF= gi:33815328
DB_XREF=JMT--02-H06.b1
CLONE=JMT--02-H06
TID=Os.40269.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.40269 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_192233.1 (A.thaliana) putative frataxin-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5746010/11Frataxin homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57400OsAffx.9395.1.S1_at11/111+33508188..33508577LysM domain containing protein, expressed
LOC_Os01g57410Os.26876.1.S1_at11/111+33509437..33512989Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os01g57420Os.14427.1.S2_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57420Os.14427.1.S1_at11/111+33512178..33519819diacylglycerol kinase variant B, putative, expressed
LOC_Os01g57430OsAffx.23820.1.S1_at11/111+33520932..33521250hypothetical protein
LOC_Os01g57440OsAffx.23821.1.S1_at11/111+33522176..33524733DNA repair metallo-beta-lactamase family protein, expressed
LOC_Os01g57450Os.34258.1.S1_at10/111+33525414..33528581universal stress protein, putative, expressed
LOC_Os01g57460Os.40269.1.S1_at10/111+33532042..33534551Frataxin homolog, putative, expressed
LOC_Os01g57470Os.9073.1.S1_at11/111+33534501..33535541EF hand family protein, expressed
LOC_Os01g57480Os.12081.2.S1_s_at11/111+33537079..33543180D-mannose binding lectin family protein, expressed
LOC_Os01g57490Os.41980.1.S1_at8/111+33545242..33550592D-mannose binding lectin family protein
LOC_Os01g57500NANA1+33550900..33553023hypothetical protein
LOC_Os01g57510OsAffx.21580.1.S1_at11/111+33554500..33558619D-mannose binding lectin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40269.1.S1_at--1096--5971Chr01:33532846..33532870 (25 bp)
GAGACAATACATGACCTGCTTGAAA
LOC_Os01g57460
Os.40269.1.S1_at--550--7751Chr01:33533001..33533025 (25 bp)
GGTGACTCTCTTCAGATGGATGGCT
LOC_Os01g57460
Os.40269.1.S1_at--1044--6231Chr01:33533015..33533039 (25 bp)
GATGGATGGCTTTGACATAGACTAT
LOC_Os01g57460
Os.40269.1.S1_at--105--7611Chr01:33533143..33533165 (23 bp)
GGGAATCAAGTTCTAACACTAAGGT
LOC_Os01g57460
Os.40269.1.S1_at--805--3111Chr01:33533215..33533238 (24 bp)
AATTTGGCTATCTTCACCTGTGAGT
LOC_Os01g57460
Os.40269.1.S1_at--37--10511NONE
TTCACCTGTGAGTGGGCCTTCTAGG
NONE
Os.40269.1.S1_at--220--4311Chr01:33534167..33534191 (25 bp)
CCTTCTAGGTTCGATTGGGATGCAC
LOC_Os01g57460
Os.40269.1.S1_at--738--331Chr01:33534208..33534232 (25 bp)
ATACAGGCGGACAGGAGCTAATCTT
LOC_Os01g57460
Os.40269.1.S1_at--436--311Chr01:33534453..33534477 (25 bp)
ATACCTGTCCTCAATAACCAGCACA
LOC_Os01g57460
Os.40269.1.S1_at--110--5131Chr01:33534473..33534497 (25 bp)
GCACACAATATATACCTTAGTTCTG
LOC_Os01g57460
Os.40269.1.S1_at--586--10051Chr01:33534490..33534514 (25 bp)
TAGTTCTGAATAAGCCGTTGTGGGT
LOC_Os01g57460
Target Sequence 
GAGACAATACATGACCTGCTTGAAAAACTTGAGGAATATGGTGACTCTCTTCAGATGGATGGCTTTGACATAGACTATGG
GAATCAAGTTCTAACACTAAGGTTAGGAGAGTTGGGGACATATGTTGTAAACAAGCAAGCACCAAACAGACAAATTTGGC
TATCTTCACCTGTGAGTGGGCCTTCTAGGTTCGATTGGGATGCACCAACAAATTGTTGGATATACAGGCGGACAGGAGCT
AATCTTGNTGAACTTCTGGAGAAAGAGATTGGTGAGCTNTGNGGNACCCCNNTAGAANNTTCATAACANTGAANGGAAAA
NTNCCNCGGAACTNAGTTGGNNGGTGCATATGACAAATGNGNTCAATGTATGNTTAAANTCANGGTGACGCNTTGGTATG
GTTAGNTTCTTTTGANGGNNAACCNAAAATTTTNGTTGTNCTAGNACACNGTCCGATCACTGCTTGGAAGTTGGAATAAA
TACCTGTCCTCAATAACCAGCACACAATATATACCTTAGTTCTGAATAAGCCGTTGTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40269.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis