Browse Element(s) Details


Os.40400.1.S1_at

Description gb:CR282842
DB_XREF= gi:44669408
DB_XREF=CR282842
CLONE=y715e07p3
TID=Os.40400.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.40400 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_194479.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6272011/113' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os08g023601/113' exoribonuclease family, domain 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62670Os.27628.2.S1_a_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62670Os.27628.1.S1_at11/113+35406586..35408745Thiopurine S-methyltransferase family protein, expressed
LOC_Os03g62680Os.49395.1.S1_at7/113+35409217..35412888glycohydrolase family protein, expressed
LOC_Os03g62690Os.50857.1.S2_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62690Os.50857.1.S1_at11/113+35413245..35418862pentatricopeptide, putative, expressed
LOC_Os03g62700Os.10159.1.S1_at11/113+35419520..35425280Protein kinase domain containing protein, expressed
LOC_Os03g62710NANA3+35427237..35428889BED zinc finger family protein
LOC_Os03g62720Os.40400.1.S1_at11/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62720Os.47354.1.A1_at1/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62730Os.8707.1.S1_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62730Os.8707.1.S2_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62740Os.8707.3.S1_x_at11/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62740Os.8707.2.A1_at9/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62750OsAffx.25798.1.S1_at11/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62750Os.8356.1.S1_at1/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62760Os.20700.1.S1_at11/113+35455661..35456964expressed protein
LOC_Os03g62770OsAffx.25799.1.S1_at11/113+35458027..35458911hypothetical protein
LOC_Os03g62780Os.48075.1.S1_at11/113+35459476..35462830S1 RNA binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0000175molecular_function3'-5'-exoribonuclease activity
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40400.1.S1_at--161--3071Chr03:35436092..35436116 (25 bp)
AATCATTGATCCAACCTCTGACGAG
LOC_Os03g62720
Os.40400.1.S1_at--199--9232Chr03:35436371..35436395 (25 bp)
TCCAGCTTGGCTGAGTGAATAAAGT
LOC_Os03g62720
Os.40400.1.S1_at--542--5231Chr03:35436387..35436411 (25 bp)
GAATAAAGTTTTAGCAGCAGGATGT
LOC_Os03g62720
Os.40400.1.S1_at--942--5051Chr03:35436400..35436424 (25 bp)
GCAGCAGGATGTTGCAAGCTCAAAC
LOC_Os03g62720
Os.40400.1.S1_at--118--6671Chr03:35436410..35436434 (25 bp)
GTTGCAAGCTCAAACAGATATCCTT
LOC_Os03g62720
Os.40400.1.S1_at--678--4831Chr03:35436417..35436441 (25 bp)
GCTCAAACAGATATCCTTAGCTGTA
LOC_Os03g62720
Os.40400.1.S1_at--88--4751Chr03:35436463..35436487 (25 bp)
GCTGATGCCTGATGTTTGCGGGACT
LOC_Os03g62720
Os.40400.1.S1_at--477--6351Chr03:35436466..35436490 (25 bp)
GATGCCTGATGTTTGCGGGACTACA
LOC_Os03g62720
Os.40400.1.S1_at--716--4671Chr03:35436480..35436504 (25 bp)
GCGGGACTACATGATTATATGCTGA
LOC_Os03g62720
Os.40400.1.S1_at--412--6851Chr03:35436507..35436531 (25 bp)
GTTTCCTTTGCAAAACAGCTAATTG
LOC_Os03g62720
Os.40400.1.S1_at--129--6971Chr03:35436544..35436568 (25 bp)
GTAGCATTGTCTGTATGTTGTTTTG
LOC_Os03g62720
Target Sequence 
AATCATTGATCCAACCTCTGACGAGGAAGCATGGCAAGACGGCAGCCTTATGGTGGCGTACATGCCAGCCCGCAANGAGN
TCACGCAGCTNACTCTTACTGGAGAGTGGTCTGATGGCNAAATCACGAACGCGGTGGAGCTCTGCATGGATGCCTGCAGT
AAGCTCTGTGACATACTTCGGGAGCNCTTGAAAGATGCTTCCAGCTTGGCTGAGTGAATAAAGTTTTAGCAGCAGGATGT
TGCAAGCTCAAACAGATATCCTTAGCTGTACAAATTTTGTAGGCAAGGGAGGCTGATGCCTGATGTTTGCGGGACTACAT
GATTATATGCTGATTGTTTCCTTTGCAAAACAGCTAATTGTTCAGAGAGAAAGTAGCATTGTCTGTATGTTGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis