Browse Element(s) Details


Os.40486.1.S1_at

Description gb:NM_194144.1
DB_XREF= gi:34915325
TID=Os.40486.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.40486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH (OJ1138_B05.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by FGENESH (OJ1138_B05.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g024801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02420OsAffx.16046.1.S1_at11/117+829996..831333hypothetical protein
LOC_Os07g02430Os.28541.1.S1_at11/117+832612..834027expressed protein
LOC_Os07g02430OsAffx.29773.1.S1_s_at1/117+832612..834027expressed protein
LOC_Os07g02440Os.36995.1.S1_at11/117+836369..839617Peroxidase 50 precursor, putative, expressed
LOC_Os07g02450OsAffx.28234.1.S1_at10/117+840165..842998Leucine Rich Repeat family protein, expressed
LOC_Os07g02460Os.30866.1.S1_at11/117+847265..848039expressed protein
LOC_Os07g02470OsAffx.16047.1.S1_x_at11/117+850804..853321hypothetical protein
LOC_Os07g02470OsAffx.16047.2.S1_at11/117+850804..853321hypothetical protein
LOC_Os07g02480Os.40486.1.S1_at1/117+856026..858194hypothetical protein
LOC_Os07g02490OsAffx.15220.1.S1_s_at11/117+863342..869930retrotransposon protein, putative, unclassified
LOC_Os07g02490OsAffx.15220.2.S1_s_at8/117+863342..869930retrotransposon protein, putative, unclassified
LOC_Os07g02500OsAffx.617.1.A1_x_at11/117+871299..872596hypothetical protein
LOC_Os07g02500OsAffx.617.1.A1_at11/117+871299..872596hypothetical protein
LOC_Os07g02510OsAffx.19542.3.S1_x_at7/117+878723..882945retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40486.1.S1_at--332--8651NONE
TGGGCACCACTATGACACAGCGTTT
NONE
Os.40486.1.S1_at--178--5631Chr07:856344..856403 (25 bp)
GACACAGCGTTTTCTTCGTGAACGT
LOC_Os07g02480
Os.40486.1.S1_at--60--1811NONE
ACCCCGGAAGCAGCGAAGTGGTTGA
NONE
Os.40486.1.S1_at--769--3371Chr07:854631..854651 (21 bp)
CAGCGAAGTGGTTGAATTGAGCAAT
NONE
Os.40486.1.S1_at--374--10751Chr07:854615..854639 (25 bp)
TTGAGCAATTGGGACATGGAGTTTA
NONE
Os.40486.1.S1_at--694--911Chr07:854588..854612 (25 bp)
AGGCATTTAGATGAACACAGACAAA
NONE
Os.40486.1.S1_at--672--6131Chr07:854511..854535 (25 bp)
GAGGGATAAAAGTTGCTGGCCTTAT
NONE
Os.40486.1.S1_at--639--6651Chr07:854500..854524 (25 bp)
GTTGCTGGCCTTATACTAAGGATTC
NONE
Os.40486.1.S1_at--247--1011Chr07:854482..854506 (25 bp)
AGGATTCTTTGTTCACCACAAAGTC
NONE
Os.40486.1.S1_at--804--6751Chr07:854472..854496 (25 bp)
GTTCACCACAAAGTCTATGTACAGA
NONE
Os.40486.1.S1_at--828--3411Chr07:854451..854475 (25 bp)
CAGAATGCTTACTTTTGGTGGAATT
NONE
Target Sequence 
TGGGCACCACTATGACACAGCGTTTTCTTCGTGAACGTGGAAAAAAGGAGTTCGACGCCATGGCCCTGCAAGGCTATGAG
CCACCACCGGAGGGCGAGCCAACTAAGGGCATATTCGAGAGTGGCTTGAAGCTGGGGAAGCAGCTGGAGGAGATGCCAGA
GAAGATGCGTTGGAAGGTCCTGGCCGACTTCTGGCCTGAGATGTTGCTCTACATCTCGCCGTCAGACAATGTCAAAGAGC
ACATCCAGCGGCTCGCCAAGGGAGGCGAGTTCATCACCCATCTCTGGGCTTTGCTCTCGCACGCCGGCATCCTTGAGCGT
CCGAAGCAGGAGCATCACCCCGGAAGCAGCGAAGTGGTTGAATTGAGCAATTGGGACATGGAGTTTAGAAGGCATTTAGA
TGAACACAGACAAAATGATTTGGGGGAGTTAAAAGGTTTGGTGGGGGATATTCAGTTGGAAGAAGGGAGGGATAAAAGTT
GCTGGCCTTATACTAAGGATTCTTTGTTCACCACAAAGTCTATGTACAGAATGCTTACTTTTGGTGGAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis