Browse Element(s) Details


Os.405.1.S1_a_at

Description gb:AK072241.1
DB_XREF= gi:32982264
TID=Os.405.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.405 (NCBI UniGene Cluster)
UG_TITLE=MRNA for lipoxygenase (rci-1 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002P20, full insert sequence.
FL= gb:AK072241.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3726011/11Lipoxygenase 2.1, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37220NANA12+22802394..22805725transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37230NANA12+22807324..22807785transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.41934.1.A1_x_at2/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.14491.2.S1_x_at1/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37240Os.47463.1.S1_x_at1/1112+22808803..22812500transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g37250Os.53949.1.S1_at11/1112+22815056..22817069transposon protein, putative, Mariner sub-class, expressed
LOC_Os12g37260Os.15171.1.S1_s_at11/1112+22821189..22826640Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37260Os.405.1.S1_a_at11/1112+22821189..22826640Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37260OsAffx.32067.1.S1_x_at3/1112+22821189..22826640Lipoxygenase 2.1, chloroplast precursor, putative, expressed
LOC_Os12g37270OsAffx.19998.2.S1_at11/1112+22833919..22836477Leucine Rich Repeat family protein
LOC_Os12g37280OsAffx.19998.1.S1_at11/1112+22839331..22844099Leucine Rich Repeat family protein, expressed
LOC_Os12g37290OsAffx.7820.1.S1_at11/1112+22848639..22852781resistance protein T10rga2-1A, putative

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009688biological_processabscisic acid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.405.1.S1_a_at--689--2111Chr12:22821654..22821678 (25 bp)
ACATGGGCACGCATGCGGAGTCAGC
LOC_Os12g37260
Os.405.1.S1_a_at--144--3011Chr12:22821401..22821425 (25 bp)
AATGAGCTTGCATCTGTTTGGCGTG
LOC_Os12g37260
Os.405.1.S1_a_at--53--4671Chr12:22821381..22821405 (25 bp)
GCGTGCTCATCGTGACATTATGTAT
LOC_Os12g37260
Os.405.1.S1_a_at--954--3911Chr12:22821334..22821358 (25 bp)
CGGCCTCGTCAAGGAATGGCTAACA
LOC_Os12g37260
Os.405.1.S1_a_at--984--2951Chr12:22821320..22821344 (25 bp)
AATGGCTAACACAGCGAGCCTGCAT
LOC_Os12g37260
Os.405.1.S1_a_at--393--1651Chr12:22821308..22821332 (25 bp)
AGCGAGCCTGCATCTGTTTGGAGTG
LOC_Os12g37260
Os.405.1.S1_a_at--947--10231Chr12:22821292..22821316 (25 bp)
TTTGGAGTGCTCATCGTGCGATTAT
LOC_Os12g37260
Os.405.1.S1_a_at--621--2291Chr12:22821261..22821285 (25 bp)
AAATGACCTGGCATCTGTTTGCCAC
LOC_Os12g37260
Os.405.1.S1_a_at--770--9451Chr12:22821248..22821272 (25 bp)
TCTGTTTGCCACTGTTTTCTTGTAA
LOC_Os12g37260
Os.405.1.S1_a_at--432--2811Chr12:22821208..22821232 (25 bp)
AAGTACAGGACACCGTATATACATA
LOC_Os12g37260
Os.405.1.S1_a_at--57--331Chr12:22821190..22821214 (25 bp)
ATACATAACGCCCTGCATTATTTCC
LOC_Os12g37260
Target Sequence 
ACATGGGCACGCATGCGGAGTCAGCGTGGATGGCGGACAGGGAGGTCAGGGCGGCGTTCGGGAGGTTCAACGAGAGGATG
ATGAGCATCGCGGAGATGATCGACTGCCGGAACAAGGATCCGGAGCGAAAGAACCGGCAGGGCCCCGGCGTGGTGCCGTA
CGTGCTGCTCAAGCCGTCCTACGGTGACCCTAAGGACATGACGTCCGTGATGGAGATGGGTATCCCCAACAGCATCTCAA
TTTGAGTTGTGCCAATGAGCTTGCATCTGTTTGGCGTGCTCATCGTGACATTATGTATGAAATAAAATGGATTAAAAATC
CGGCCTCGTCAAGGAATGGCTAACACAGCGAGCCTGCATCTGTTTGGAGTGCTCATCGTGCGATTATGAAATAAAATGAC
CTGGCATCTGTTTGCCACTGTTTTCTTGTAANNANNNNANNNNANNAAGTACAGGACACCGTATATACATAACGCCCTGC
ATTATTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.405.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis