Browse Element(s) Details


Os.4071.2.S1_x_at

Description gb:NM_196842.1
DB_XREF= gi:37535043
TID=Os.4071.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4071 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative RNase (OSJNBb0011A08.1), mRNA.
PROD=putative RNase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3206011/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32010OsAffx.6832.1.S1_at11/1110+16490163..16491274hypothetical protein
LOC_Os10g32020Os.46821.2.S1_x_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.1.S1_at9/1110+16491760..16495646expressed protein
LOC_Os10g32020Os.46821.2.S1_at7/1110+16491760..16495646expressed protein
LOC_Os10g32030OsAffx.30631.1.S1_at11/1110+16497198..16502018AT hook motif-containing protein, putative
LOC_Os10g32040OsAffx.20283.1.S1_at10/1110+16505082..16506294hypothetical protein
LOC_Os10g32050OsAffx.30632.1.S1_at11/1110+16506527..16507545hypothetical protein
LOC_Os10g32060Os.4071.2.S1_x_at11/1110+16510636..16516402retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g32070OsAffx.20281.1.S1_at11/1110+16518014..16519760GATA zinc finger family protein
LOC_Os10g32080OsAffx.18485.3.S1_at11/1110+16522643..16524163Exostosin family protein
LOC_Os10g32090OsAffx.30633.1.S1_at11/1110+16524730..16525308hypothetical protein
LOC_Os10g32100NANA10+16527337..16527957hypothetical protein
LOC_Os10g32110OsAffx.8050.1.S1_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110OsAffx.8050.1.S1_x_at11/1110+16532458..16533864Exostosin family protein, expressed
LOC_Os10g32110Os.46796.2.S1_x_at1/1110+16532458..16533864Exostosin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4071.2.S1_x_at--197--1571Chr10:16515731..16515834 (25 bp)
AGCTATTACTCTTTCCAGTGGTGTG
LOC_Os10g32060
Os.4071.2.S1_x_at--702--3791Chr10:16515866..16515890 (25 bp)
CTCCGGCTATAACCCTTCTAGATAA
LOC_Os10g32060
Os.4071.2.S1_x_at--1131--5991Chr10:16515984..16516008 (25 bp)
GAGACCTATGTTTTGCATCTTGCTG
LOC_Os10g32060
Os.4071.2.S1_x_at--189--6111Chr10:16516022..16516046 (25 bp)
GAGTCCAGCTTGCAGTAACCTGTTG
LOC_Os10g32060
Os.4071.2.S1_x_at--849--7691Chr10:16516064..16516088 (25 bp)
GGGTACACCTCGATGATGAACACTT
LOC_Os10g32060
Os.4071.2.S1_x_at--1144--10451Chr10:16516092..16516116 (25 bp)
TTACCAGGCCTCATTTTGGAGCACT
LOC_Os10g32060
Os.4071.2.S1_x_at--1035--5931Chr10:16516110..16516134 (25 bp)
GAGCACTATGTGAGCTCCAGCTAGT
LOC_Os10g32060
Os.4071.2.S1_x_at--1089--7731Chr10:16516142..16516166 (25 bp)
GGTGTAAGCTTCACTACTTGGGCCT
LOC_Os10g32060
Os.4071.2.S1_x_at--37--10091Chr10:16516172..16516196 (25 bp)
TAGGCGTTGCCCAAGTTAGTAGACT
LOC_Os10g32060
Os.4071.2.S1_x_at--670--10211Chr10:16516282..16516306 (25 bp)
TTTGGCCTCTTTACCTACGAAAGCA
LOC_Os10g32060
Os.4071.2.S1_x_at--214--4791Chr10:16516330..16516354 (25 bp)
GCTCCATTTTGTCAGGCTTGTGAAT
LOC_Os10g32060
Target Sequence 
AGCTATTACTCTTTCCAGTGGTGTGGTCTCTGAGGAGCGTGGCGATGGCTAGCCTTCTCCGGCTATAACCCTTCTAGATA
ATGGGAGTAACTAGTATATGTAGTTAACTAATTAGCAGGTGGAGACCTATATGATGGGAGTAACTAATATATGTAGCTAA
CTAATTAGCAACCAGAGACCTATGTTTTGCATCTTGCTGCTCTGGCCTCTGGGAGTCCAGCTTGCAGTAACCTGTTGAAG
ATGATCCGTGTGAAGGGTACACCTCGATGATGAACACTTGAGTTACCAGGCCTCATTTTGGAGCACTATGTGAGCTCCAG
CTAGTTATTCTTGGTGTAAGCTTCACTACTTGGGCCTTCACATAGGCGTTGCCCAAGTTAGTAGACTGGCAGCGATGAAC
TGATTGAGTGCGATGATGCAATTGCTAGTTTGCCATGTGTTGGGTTTTGGTTTTGGGGGGCTAAGAACCAAGTTTGGCCT
CTTTACCTACGAAAGCATCTGCATGTAAACTGAGCTATAAGCTCCATTTTGTCAGGCTTGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4071.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis