Browse Element(s) Details


Os.41333.1.A1_at

Description gb:NM_192682.1
DB_XREF= gi:34912447
GEN=P0681B11.28
TID=Os.41333.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41333 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0681B11.28 (P0681B11.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0681B11.28 (P0681B11.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4206011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42020OsAffx.380.1.S1_at3/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42020OsAffx.21975.1.S1_x_at1/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42030Os.41335.2.S1_x_at11/111+24165857..24167611ATPase, AAA family protein, expressed
LOC_Os01g42050OsAffx.23629.1.S1_s_at11/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42050OsAffx.23629.2.S1_at8/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42040Os.23694.1.S1_at11/111+24170122..24173706Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g42060Os.41333.1.A1_at11/111+24173889..24177174expressed protein
LOC_Os01g42070OsAffx.21384.2.S1_x_at11/111+24177717..24181332kinesin motor protein, putative, expressed
LOC_Os01g42080Os.47749.1.S1_at11/111+24182576..24188461expressed protein
LOC_Os01g42090Os.33697.1.S1_at11/111+24191529..24194053nodulin MtN3 protein, putative, expressed
LOC_Os01g42100OsAffx.21382.1.S1_at11/111+24202161..24203062hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41333.1.A1_at--391--8071Chr01:24176640..24176664 (25 bp)
GGAGCAGAAGACTGTCCACGACGCC
LOC_Os01g42060
Os.41333.1.A1_at--808--5531Chr01:24176727..24176751 (25 bp)
GAAACTATGCTCCTCATACAGCCTT
LOC_Os01g42060
Os.41333.1.A1_at--1066--711Chr01:24176777..24176801 (25 bp)
ATGATTCCATCTTGCCTTTGAACAG
LOC_Os01g42060
Os.41333.1.A1_at--465--1171Chr01:24176807..24176831 (25 bp)
AGTACAAGAGCCATTCGTTTCGCAA
LOC_Os01g42060
Os.41333.1.A1_at--193--111Chr01:24176819..24176843 (25 bp)
ATTCGTTTCGCAACTCACGGGAAGA
LOC_Os01g42060
Os.41333.1.A1_at--208--6011Chr01:24176842..24176866 (25 bp)
GAGAGCATCACAGTCTTTAACACGT
LOC_Os01g42060
Os.41333.1.A1_at--771--10331Chr01:24176857..24176881 (25 bp)
TTTAACACGTTTAGCGGCACCTCTT
LOC_Os01g42060
Os.41333.1.A1_at--665--8251Chr01:24176872..24176896 (25 bp)
GGCACCTCTTCCTCTGAGAATGGAA
LOC_Os01g42060
Os.41333.1.A1_at--101--8911Chr01:24176886..24176910 (25 bp)
TGAGAATGGAACCAGCAGCTGCTCT
LOC_Os01g42060
Os.41333.1.A1_at--78--7611Chr01:24176958..24176982 (25 bp)
GGGCACAAACTTTCAGTCAGCAGCA
LOC_Os01g42060
Os.41333.1.A1_at--1046--4711Chr01:24176989..24177013 (25 bp)
GCTGGACCTTCCAACTATGCAGATA
LOC_Os01g42060
Target Sequence 
GGAGCAGAAGACTGTCCACGACGCCTCCTCGAATGAAGCTTTGGGACAATTGGGTGAAACTGTAAATGCTAAGGAATGTA
TCGAGAGGAAACTATGCTCCTCATACAGCCTTGGCAGGGATATGCTAGGCCTGAAGCATGATTCCATCTTGCCTTTGAAC
AGTACGAAGTACAAGAGCCATTCGTTTCGCAACTCACGGGAAGAGAGCATCACAGTCTTTAACACGTTTAGCGGCACCTC
TTCCTCTGAGAATGGAACCAGCAGCTGCTCTGGTGAAAGTGAGAGCTGCAGTGACTGTAGCTACGGAGATGAGATGCTGG
GCACAAACTTTCAGTCAGCAGCACAAGAGGCTGGACCTTCCAACTATGCAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41333.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis