Browse Element(s) Details


Os.41415.1.S1_at

Description gb:AK121329.1
DB_XREF= gi:37990952
TID=Os.41415.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.41415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative S-receptor kinase (P0700A11.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118A19, full insert sequence.
FL= gb:AK121329.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4049911/11D-mannose binding lectin family protein, expressed
LOC_Os10g088302/11hypothetical protein
LOC_Os06g053591/11NB-ARC domain containing protein, expressed
LOC_Os03g078501/11tRNA methyl transferase family protein, expressed
LOC_Os03g479021/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40470Os.8078.1.S1_at11/111+23182352..23186587Vacuolar ATP synthase subunit d, putative, expressed
LOC_Os01g40480OsAffx.30059.1.S1_x_at11/111+23195394..23198636C2 domain-containing protein, putative, expressed
LOC_Os01g40480OsAffx.30059.2.S1_x_at3/111+23195394..23198636C2 domain-containing protein, putative, expressed
LOC_Os01g40499Os.41415.2.S1_x_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.41415.1.S1_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.21411.1.S1_at9/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.11410.1.S1_x_at4/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.49232.1.S1_x_at3/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.18435.1.S1_x_at1/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40520OsAffx.11409.1.S1_at11/111+23222929..23223669hypothetical protein
LOC_Os01g40530NANA1+23224329..23225691hypothetical protein
LOC_Os01g40540OsAffx.23609.1.S1_at8/111+23226677..23227165lectin receptor-type protein kinase, putative
LOC_Os01g40550Os.20437.1.S1_at7/111+23227915..23229110Hsp20/alpha crystallin family protein, expressed
LOC_Os01g40560OsAffx.21410.1.S1_x_at11/111+23233291..23234659SPFH domain/Band 7 family protein
LOC_Os01g40570Os.8309.1.S1_at10/111+23235138..23237522Outer plastidial membrane protein porin, putative, expressed
LOC_Os01g40580Os.31431.1.S1_at11/111+23241450..23243021hypersensitive-induced response protein, putative, expressed
LOC_Os01g40590Os.5667.1.S1_at11/111+23245301..23250709Protein kinase APK1A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0004672molecular_functionprotein kinase activity
GO:0004808molecular_functiontRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41415.1.S1_at--194--9571Chr01:23206991..23207015 (25 bp)
TCTTCTCACACATAAGCTACTTGGA
LOC_Os01g40499
Os.41415.1.S1_at--408--8031Chr01:23206969..23206993 (25 bp)
GGAGTTGGAGTAGCTTATGACAAAT
LOC_Os01g40499
Os.41415.1.S1_at--1038--51320Chr10:5495898..5495922 (25 bp)
GCAAAATCTATTTCGAGAGGCATCT
NONE
Os.41415.1.S1_at--882--1311Chr01:23206904..23206928 (25 bp)
AGAGGCATCTTGATTTAGACTTAAC
LOC_Os01g40499
Os.41415.1.S1_at--553--6536Chr03:15209499..15209521 (23 bp)
GATTTAGACTTAACGAGCGACGCAG
NONE
Os.41415.1.S1_at--1121--5872Chr02:33458893..33458917 (25 bp)
GAGCGACGCAGACAATTACGTGAGA
NONE
Os.41415.1.S1_at--778--10471Chr01:23206864..23206888 (25 bp)
TTACGTGAGAAGTACCAGTAGCGTT
LOC_Os01g40499
Os.41415.1.S1_at--44--11911Chr05:16137381..16137402 (22 bp)
AGTAGCGTTACAGACATGCATGCAA
NONE
Os.41415.1.S1_at--492--56716Chr10:5495982..5496005 (24 bp)
GACATGCATGCAAGTAGTTTTTCTA
NONE
Os.41415.1.S1_at--359--69318Chr04:11103694..11103719 (25 bp)
GTAGTTTTTCTATTAGGTTGTGCAT
NONE
Os.41415.1.S1_at--387--25319Chr12:12168286..12168689 (25 bp)
AACTATTCATCCGATCTACGATCCG
NONE
Target Sequence 
TCTTCTCACACATAAGCTACTTGGAGTTGGAGTAGCTTATGACAAATTTAAAAATAAAATATATTAATATACGCAAAATC
TATTTCGAGAGGCATCTTGATTTAGACTTAACGAGCGACGCAGACAATTACGTGAGAAGTACCAGTAGCGTTACAGACAT
GCATGCAAGTAGTTTTTCTATTAGGTTGTGCATTTTTTTCTTCTTATGAAATTTTCTCTTAAACTATTCATCCGATCTAC
GATCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis