Browse Element(s) Details


Os.4190.1.S1_at

Description gb:AB032761.1
DB_XREF= gi:5931624
GEN=rab5B
TID=Os.4190.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) rab5B mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) rab5B mRNA, complete cds.
FL= gb:AB032761.1 gb:AK105389.1 gb:AK121527.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0574011/11Ras-related protein RHN1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05680Os.57105.1.S1_x_at11/113+2812244..2816379jmjC domain containing protein, expressed
LOC_Os03g05690Os.57046.1.S1_s_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05690Os.9018.1.S1_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05700Os.56054.1.S1_at11/113+2820901..2821502expressed protein
LOC_Os03g05710Os.7568.1.S1_a_at11/113+2822968..2823937GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g05720Os.9622.1.S1_at11/113+2824838..2830793phage head-tail adaptor family protein, expressed
LOC_Os03g05730Os.4689.1.S1_at11/113+2831406..2835792Cell division cycle protein 48 homolog, putative, expressed
LOC_Os03g05740Os.4190.1.S1_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05740Os.48663.1.A1_s_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05750Os.49591.1.S1_at9/113+2845490..2847256heavy metal-associated domain containing protein, expressed
LOC_Os03g05760Os.26417.1.S1_at11/113+2849474..2854541Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os03g05770Os.11550.1.S1_at11/113+2857942..2859941Peroxidase family protein, expressed
LOC_Os03g05780Os.11459.1.S1_at11/113+2862160..2867033AMP-binding enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0045022biological_processearly endosome to late endosome transport
GO:0005769cellular_componentearly endosome
GO:0010009cellular_componentexternal side of endosome membrane
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4190.1.S1_at--981--2211Chr03:2837989..2838209 (25 bp)
ACAAGAGAGGTATGCTGCCTTGGCA
LOC_Os03g05740
Os.4190.1.S1_at--18--3751Chr03:2837963..2837987 (25 bp)
CTCTTTACTACAGAGGAGCTGCTGC
LOC_Os03g05740
Os.4190.1.S1_at--508--3831Chr03:2837939..2837963 (25 bp)
CTGCAGTTGTTGTCTACGACATAAC
LOC_Os03g05740
Os.4190.1.S1_at--710--5031Chr03:2837937..2837961 (25 bp)
GCAGTTGTTGTCTACGACATAACTA
LOC_Os03g05740
Os.4190.1.S1_at--645--6631Chr03:2837931..2837955 (25 bp)
GTTGTCTACGACATAACTAGTCCAG
LOC_Os03g05740
Os.4190.1.S1_at--899--7151Chr03:2837928..2837952 (25 bp)
GTCTACGACATAACTAGTCCAGAAT
LOC_Os03g05740
Os.4190.1.S1_at--614--1851Chr03:2837924..2837948 (25 bp)
ACGACATAACTAGTCCAGAATCATT
LOC_Os03g05740
Os.4190.1.S1_at--543--2431Chr03:2836293..2836317 (25 bp)
AAAAGTTGCTTAGTTGCTGTGCCTG
LOC_Os03g05740
Os.4190.1.S1_at--444--2331Chr03:2836292..2836316 (25 bp)
AAAGTTGCTTAGTTGCTGTGCCTGT
LOC_Os03g05740
Os.4190.1.S1_at--789--2811Chr03:2836291..2836315 (25 bp)
AAGTTGCTTAGTTGCTGTGCCTGTG
LOC_Os03g05740
Os.4190.1.S1_at--865--1231Chr03:2836290..2836314 (25 bp)
AGTTGCTTAGTTGCTGTGCCTGTGT
LOC_Os03g05740
Target Sequence 
ACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGTTGTCTACGACATAACTAGTC
CAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTCAAAAACATGGTAGTCCTGATATTATCATGGTTTTGGTT
GGTAATAAAGCTGATCTACATNAAAATCGACATGTATCTTCTCAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGT
TTTCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAA
CGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGTCA
GGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCG
TATTGTATATGTTAATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTTGCT
TAGTTGCTGTGCCTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis