Browse Element(s) Details


Os.42069.1.S1_x_at

Description gb:CB679144
DB_XREF= gi:29682869
DB_XREF=OSJNEf02E03.f
CLONE=OSJNEf02E03
TID=Os.42069.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42069 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dynein light chain (P0460E08.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g555108/11Dynein light chain type 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55470OsAffx.10637.1.S1_s_at6/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55470OsAffx.10637.3.S1_s_at3/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55470OsAffx.10637.4.S1_s_at1/111+32284347..32287867transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_x_at7/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55480OsAffx.32056.1.S1_at3/111+32289472..32292625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g55490Os.17701.2.S1_at11/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490Os.17701.1.S1_x_at10/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.4.S1_x_at2/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55490OsAffx.11451.3.S1_x_at1/111+32296141..32301019transcriptional regulator family protein, putative, expressed
LOC_Os01g55500Os.13087.1.S1_at11/111+32302851..32306904xanthine/uracil permease family protein, expressed
LOC_Os01g55510Os.49634.1.S1_at11/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55510Os.49634.1.S1_x_at11/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55510Os.42069.1.S1_x_at8/111+32308791..32309647Dynein light chain type 1 family protein, expressed
LOC_Os01g55520Os.11073.1.S1_at9/111+32313349..32316046pollen-specific kinase partner protein, putative, expressed
LOC_Os01g55530Os.33076.1.S1_at11/111+32318941..32323295expressed protein
LOC_Os01g55540Os.9.1.S1_s_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed
LOC_Os01g55540Os.9.1.S1_at11/111+32325573..32330538Aspartate aminotransferase, cytoplasmic, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0005875cellular_componentmicrotubule associated complex
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42069.1.S1_x_at--1111--4971Chr01:32308966..32308989 (24 bp)
GCATCGCCGCTCACATCAAGAAGGA
LOC_Os01g55510
Os.42069.1.S1_x_at--962--6071Chr01:32309173..32309197 (25 bp)
GAGTTTGACATGATCCACGGGCCGG
LOC_Os01g55510
Os.42069.1.S1_x_at--522--8191Chr01:32309251..32309275 (25 bp)
GGAAGCTTCATCTACTTCAAGCTGG
LOC_Os01g55510
Os.42069.1.S1_x_at--250--1011Chr01:32309284..32309308 (25 bp)
AGGTTCCTCGTCTTCAAAGGCGCAG
LOC_Os01g55510
Os.42069.1.S1_x_at--1056--8911NONE
TGAGCTGAAAGCGACATCCACGACT
NONE
Os.42069.1.S1_x_at--971--5391NONE
GAAGCTAACATGCATCTGATTCCGA
NONE
Os.42069.1.S1_x_at--940--7551Chr01:32309396..32309420 (25 bp)
GGGCGCTACAAGTTTACTCTCCCGG
LOC_Os01g55510
Os.42069.1.S1_x_at--833--9491Chr01:32309413..32309437 (25 bp)
TCTCCCGGTTTTTGATGACGACGAC
LOC_Os01g55510
Os.42069.1.S1_x_at--741--4651NONE
GCGTCCGCTGGCACGATACATGGAG
NONE
Os.42069.1.S1_x_at--1068--5191Chr01:32309472..32309496 (25 bp)
GAATTGTACTCGCACGATAGCACAG
LOC_Os01g55510
Os.42069.1.S1_x_at--947--7811Chr01:32309538..32309562 (25 bp)
GGTCAAACATGCGATTCCACTTGGT
LOC_Os01g55510
Target Sequence 
GCATCGCCGCTCACATCAAGAAGGAGTTTGACATGATCCACGGGCCGGGATGGCAGTGCGTGGTGGGCGCCAGCTTCNGC
TGCTACTTCACGCACAGCAAGGGAAGCTTCATCTACTTCAAGCTGGGGGCGCTCAGGTTCCTCGTCTTCAAAGGCGCAGC
ATCGTANCACATGAGCTGAAAGCGACATCCACGACTCCAGAAGCTAACATGCATCTGATTCCGAATAATCAATCAAAATA
ACCAGCGGGCGCTACAAGTTTACTCTCCCGGTTTTTGATGACGACGACGATGCGGCGTCCGCTGGCACGATACATGGAGC
GTGAATTGTACTCGCACGATAGCACAGTAGAAAATTGGAAGTACGGTGTGCAAAAGATTGGAATTGCTGGTCAAACATGC
GATTCCACTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42069.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis