Browse Element(s) Details


Os.42148.1.S1_x_at

Description gb:NM_191171.1
DB_XREF= gi:34909425
GEN=P0439E07.27
TID=Os.42148.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42148 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative casein kinase-like protein (P0439E07.27), mRNA.
PROD=putative casein kinase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5410011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54040Os.32537.2.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_s_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040OsAffx.21636.1.S1_x_at11/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.1.A1_at10/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.2.S1_at9/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.32537.1.S1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54040Os.20712.2.A1_at7/111+31405460..31414855ATP-dependent protease La domain containing protein, expressed
LOC_Os01g54050OsAffx.21635.2.S1_at11/111+31418381..31422124Histidine-containing phosphotransfer protein 4, putative
LOC_Os01g54060OsAffx.2328.1.S1_at11/111+31423436..31424043hypothetical protein
LOC_Os01g54070NANA1+31424357..31424677hypothetical protein
LOC_Os01g54080Os.16488.2.S1_at11/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54080Os.16488.1.S1_at10/111+31426283..31433668Kinesin motor domain containing protein, expressed
LOC_Os01g54090Os.37326.1.S1_at11/111+31435165..31436992expressed protein
LOC_Os01g54100Os.42148.1.S1_x_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54100Os.7493.1.S1_at11/111+31438140..31442707protein kinase family protein, putative, expressed
LOC_Os01g54119Os.35400.1.S1_at11/111+31447556..31459579retrotransposon protein, putative, unclassified, expressed
LOC_Os01g54140OsAffx.21632.1.S1_at11/111+31461100..31463986hypothetical protein
LOC_Os01g54150OsAffx.22461.2.S1_x_at11/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54150OsAffx.22461.3.S1_x_at3/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42148.1.S1_x_at--662--431Chr01:31439443..31439467 (25 bp)
ATCTTGCTCAAATCTGTGGGCTCTA
LOC_Os01g54100
Os.42148.1.S1_x_at--617--411Chr01:31439418..31439442 (25 bp)
ATCATGGATGCTGGCACTGGGTTCA
LOC_Os01g54100
Os.42148.1.S1_x_at--142--6071Chr01:31439149..31439173 (25 bp)
GAGTTCCCTGGTAGTGATGTCAAAA
LOC_Os01g54100
Os.42148.1.S1_x_at--635--6611Chr01:31438800..31438824 (25 bp)
GTTGTCGAACTGGACTTCCTATACC
LOC_Os01g54100
Os.42148.1.S1_x_at--1051--9771Chr01:31438733..31438757 (25 bp)
TAACTGCAACTGCTGCAACCTGGGA
LOC_Os01g54100
Os.42148.1.S1_x_at--872--4751Chr01:31438704..31438728 (25 bp)
GCTGCATTCGTTTTAAGCGTCCCAA
LOC_Os01g54100
Os.42148.1.S1_x_at--1161--8891Chr01:31438646..31438670 (25 bp)
TGAGAACATCTGCTTTCCCTAGTCA
LOC_Os01g54100
Os.42148.1.S1_x_at--1104--3251Chr01:31438475..31438647 (25 bp)
CAACATGTCAAGAAATCTGGCCATC
LOC_Os01g54100
Os.42148.1.S1_x_at--785--4311Chr01:31438441..31438465 (25 bp)
CCATTTCGAGTTCTAGGCTTCTAGC
LOC_Os01g54100
Os.42148.1.S1_x_at--639--10571Chr01:31438423..31438447 (25 bp)
TTCTAGCATTGGTCTCTGCTCAGAG
LOC_Os01g54100
Os.42148.1.S1_x_at--1023--8991Chr01:31438368..31438392 (25 bp)
TGAATGCGACTTAGCGTACCCTGAC
LOC_Os01g54100
Target Sequence 
ATCTTGCTCAAATCTGTGGGCTCTAATCATGGATGCTGGCACTGGGTTCACTTCCCAGGTTTATGAACTTTCACCACATT
TTCTTCACAAGGAATGGATTATGGACCAATGGGAAAGGAACTACTATATAACTGCACTTGCTGGAGCAAATAATGGGAGT
TCCCTGGTAGTGATGTCAAAAGGAACAATGTATACACAACAATCCTACAAAGTTGTCGAACTGGACTTCCTATACCCCAG
TGAGGGAATTCACCAGAGATGGGACAATGGTTACCGGATAACTGCAACTGCTGCAACCTGGGATCAGGCTGCATTCGTTT
TAAGCGTCCCAAGAAGGAAGCCTACAGATGAAACTCAAGAGACGCTGAGAACATCTGCTTTCCCTAGTCAACATGTCAAG
AAATCTGGCCATCTAGTTGAAGCCATTTCGAGTTCTAGGCTTCTAGCATTGGTCTCTGCTCAGAGTGCAGCGGCTTATGT
GATGCTGGCAAGTTCTGAATGCGACTTAGCGTACCCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42148.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis