Browse Element(s) Details

Os.42235.1.S1_at

Description

gb:NM_197507.1
DB_XREF= gi:37536373
TID=Os.42235.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42235 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0038A07.12), mRNA.
PROD=unknown protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g20380	1/11	hypothetical protein
LOC_Os03g10700	1/11	expressed protein
LOC_Os07g35980	1/11	expressed protein
LOC_Os02g12120	1/11	retrotransposon protein, putative, Ty1-copia subclass

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g20320	Os.5054.1.S1_at	11/11	6	+	11676004..11681090	trigger factor family protein, expressed
LOC_Os06g20320	Os.27772.1.S1_x_at	1/11	6	+	11676004..11681090	trigger factor family protein, expressed
LOC_Os06g20330	OsAffx.15514.1.S1_at	11/11	6	+	11681267..11682206	expressed protein
LOC_Os06g20340	Os.6777.1.S1_at	10/11	6	+	11683184..11686911	Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os06g20354	OsAffx.27732.1.S1_s_at	11/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20354	Os.50852.1.S1_at	11/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20354	OsAffx.15515.1.S1_at	10/11	6	+	11692032..11694276	expressed protein
LOC_Os06g20370	Os.12198.1.S1_a_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.1.S1_at	11/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	Os.12198.2.S1_x_at	10/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20370	OsAffx.13408.1.S1_at	1/11	6	+	11695841..11700294	microtubule-associated protein MAP65-1a, putative, expressed
LOC_Os06g20380	OsAffx.15516.1.S1_at	9/11	6	+	11703388..11705017	hypothetical protein
LOC_Os06g20380	Os.42235.1.S1_at	1/11	6	+	11703388..11705017	hypothetical protein
LOC_Os06g20390	Os.5637.1.S1_at	10/11	6	+	11711593..11716063	expressed protein
LOC_Os06g20400	Os.18614.1.S1_at	11/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400	OsAffx.15517.1.S1_s_at	11/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20400	OsAffx.15517.1.S1_at	10/11	6	+	11718035..11721859	DHHC zinc finger domain containing protein, expressed
LOC_Os06g20410	Os.24334.1.A1_at	11/11	6	+	11724807..11733595	BAH domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.42235.1.S1_at--889--105	10	Chr08:23308593..23308793 (25 bp)	AGGTGGCTGGGTGCCGGCTCGGCGC	NONE
Os.42235.1.S1_at--818--169	2	Chr10:20329010..20329034 (25 bp)	AGCCATGGTTTCGATCTCGTATGTG	NONE
Os.42235.1.S1_at--604--433	2	Chr10:20329008..20329032 (25 bp)	CCATGGTTTCGATCTCGTATGTGCC	NONE
Os.42235.1.S1_at--1116--81	1	Chr10:20329006..20329030 (25 bp)	ATGGTTTCGATCTCGTATGTGCCCC	NONE
Os.42235.1.S1_at--173--685	1	Chr10:20329003..20329027 (25 bp)	GTTTCGATCTCGTATGTGCCCCTTT	NONE
Os.42235.1.S1_at--58--1061	1	Chr10:20329001..20329025 (25 bp)	TTCGATCTCGTATGTGCCCCTTTGT	NONE
Os.42235.1.S1_at--968--941	1	Chr10:20328898..20328922 (25 bp)	TCGGCACGTGGGTGGTGCTATTTTT	NONE
Os.42235.1.S1_at--521--395	1	Chr10:20328897..20328921 (25 bp)	CGGCACGTGGGTGGTGCTATTTTTT	NONE
Os.42235.1.S1_at--958--925	1	Chr10:20328864..20328888 (25 bp)	TCCTGGTTAAGACTCTCCGGGGTTG	NONE
Os.42235.1.S1_at--241--139	2	Chr10:20328855..20328879 (25 bp)	AGACTCTCCGGGGTTGTAATCTTAT	NONE
Os.42235.1.S1_at--781--383	4	Chr12:27412647..27412702 (25 bp)	CTGCTCTATCAATATCAATAGAACT	NONE

Target Sequence

AGGTGGCTGGGTGCCGGCTCGGCGCGAGAGGCGCGGGCGGCGGAGATGGAGGCCGGCTTGGCACAAGAGGCGCGGCCGAT
GAAGGGAGGCCGGATTGGCGCGAGAGGCGCGTCCGGTGGAGGAGGCTGGCTTGGCGCAGAGAGGCGCGGCCGGCGGTGGA
GGAGGCGACCTAGGTGTGAGGAGGAGCTGCCGGTGGGTGTGGCGCGGCCTTCGGCGCACGAAGGCTGGCCAGCGGGGGAC
GTCGGTGAAGGGGTCCCACATGTCGGCAAAGCTTGTGTGGTGGTGGAGCATCGGTGCGTCAGCCATGGTTTCGATCTCGT
ATGTGCCCCTTTGTTGGCCTAGTGGCGGTCGGTCACGCTTAGCGGCGGCCGATCCGGTGCTAGCCTTCTCCTAGGCGTGT
GTGTTGGCGATGTCGGCACGTGGGTGGTGCTATTTTTTTTTCCTTTTCCTGGTTAAGACTCTCCGGGGTTGTAATCTTAT
AATTTTTTTCTGCTCTATCAATATCAATAGAACT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis