Browse Element(s) Details


Os.42490.1.S1_x_at

Description gb:NM_190505.1
DB_XREF= gi:34908093
GEN=P0031D11.3
TID=Os.42490.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42490 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0031D11.3 (P0031D11.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0031D11.3 (P0031D11.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6207010/11cation efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62010Os.36919.2.S1_s_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_x_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62020Os.9835.2.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020Os.9835.1.S1_a_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020OsAffx.11691.1.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62030OsAffx.9560.1.S1_at11/111+36227584..36228075disease resistance-responsive family protein, putative
LOC_Os01g62040Os.38033.3.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.3.S1_x_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.1.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.2.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62050OsAffx.21763.2.S1_s_at11/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.2.S1_at10/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.1.S1_at2/111+36235334..36235956hypothetical protein
LOC_Os01g62060Os.30998.1.S1_at11/111+36238933..36240170uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g62070Os.10121.1.S1_at11/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_x_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62080Os.54716.1.S1_x_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080OsAffx.2386.1.S1_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080Os.20399.1.S1_s_at10/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62090OsAffx.11692.1.S1_at8/111+36262295..36265380hypothetical protein
LOC_Os01g62090OsAffx.30618.1.S1_at1/111+36262295..36265380hypothetical protein
LOC_Os01g62100OsAffx.13663.1.S1_x_at11/111+36267089..36276320hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0016020cellular_componentmembrane
GO:0008324molecular_functioncation transporter activity
GO:0015562molecular_functionefflux permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42490.1.S1_x_at--688--5771Chr01:36243825..36243849 (25 bp)
GACGAGGCCTTGCAGTGGCCGTGGC
LOC_Os01g62070
Os.42490.1.S1_x_at--147--8492Chr03:23706774..23706800 (25 bp)
TGGCGGCAACAGTGCTGCTGCTGCT
NONE
Os.42490.1.S1_x_at--728--3391Chr01:36243754..36243778 (25 bp)
CAGCTGCAGGCCGTAGCTTCGTCTT
LOC_Os01g62070
Os.42490.1.S1_x_at--907--4991Chr01:36243749..36243773 (25 bp)
GCAGGCCGTAGCTTCGTCTTCTGCT
LOC_Os01g62070
Os.42490.1.S1_x_at--234--1951Chr01:36243700..36243724 (25 bp)
ACGGCGACGGACAAGAGTAAGCTGC
LOC_Os01g62070
Os.42490.1.S1_x_at--265--8151Chr01:36243692..36243716 (25 bp)
GGACAAGAGTAAGCTGCCGTTCATG
LOC_Os01g62070
Os.42490.1.S1_x_at--831--3211Chr01:36243689..36243713 (25 bp)
CAAGAGTAAGCTGCCGTTCATGCCC
LOC_Os01g62070
Os.42490.1.S1_x_at--766--6091Chr01:36243686..36243710 (25 bp)
GAGTAAGCTGCCGTTCATGCCCGTC
LOC_Os01g62070
Os.42490.1.S1_x_at--975--4431Chr01:36243602..36243626 (25 bp)
GCCTAAGCCCAAGTCGGCGAACAGG
LOC_Os01g62070
Os.42490.1.S1_x_at--49--3711Chr01:36243600..36243624 (25 bp)
CTAAGCCCAAGTCGGCGAACAGGGA
LOC_Os01g62070
Os.42490.1.S1_x_at--1097--4371Chr01:36243594..36243618 (25 bp)
CCAAGTCGGCGAACAGGGAGGCAGC
NONE
Target Sequence 
GACGAGGCCTTGCAGTGGCCGTGGCGGCAACAGTGCTGCTGCTGCTGCCGCTGCCAAGCATCTCCTCCCTGCAGCTGCAG
GCCGTAGCTTCGTCTTCTGCTGCTCCGGCAACGACGGCCACGGCCACGGCGACGGACAAGAGTAAGCTGCCGTTCATGCC
CGTCCCGACGGAACCATTCCCACCTTCGCCGCCTCACGGCCACCGNCTCCCGGTTGTGCCGCCGCCTAAGCCCAAGTCGG
CGAACAGGGAGGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42490.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis