Browse Element(s) Details


Os.4265.2.S1_a_at

Description gb:CB967475
DB_XREF= gi:30229584
DB_XREF=NL53_B07
CLONE=NL53_B07
TID=Os.4265.2
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.4265 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_196295.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1008011/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10050Os.47012.1.S1_at11/112+5228743..5231338expressed protein
LOC_Os02g10060Os.51857.1.S1_at11/112+5238179..5242097SWIRM domain containing protein, expressed
LOC_Os02g10070Os.4264.1.S1_at10/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10070OsAffx.3082.1.S1_at1/112+5242739..5249293Citrate synthase 4, mitochondrial precursor, putative, expressed
LOC_Os02g10080Os.4265.2.S1_a_at11/112+5251028..5253737Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g10090Os.4266.1.S1_at11/112+5254077..5257593expressed protein
LOC_Os02g10100OsAffx.11967.1.S1_x_at11/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10100Os.56430.1.S1_x_at9/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10100Os.56430.1.S1_at8/112+5259819..5266509Leucine Rich Repeat family protein, expressed
LOC_Os02g10110OsAffx.12695.1.S1_at11/112+5270233..5276454Protein kinase domain containing protein, expressed
LOC_Os02g10120Os.15829.1.S1_at10/112+5276668..5282623Lipoxygenase 2.3, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4265.2.S1_a_at--728--3051Chr02:5252865..5252889 (25 bp)
AATCTTGGTGGTCCAGCTATTGCGC
LOC_Os02g10080
Os.4265.2.S1_a_at--263--4531Chr02:5252888..5252912 (25 bp)
GCCGCCTCCAGGAAGAATGCCAATG
LOC_Os02g10080
Os.4265.2.S1_a_at--319--6771Chr02:5252949..5252973 (25 bp)
GTTAAGACTCGCCTGTGCAACAAGT
LOC_Os02g10080
Os.4265.2.S1_a_at--780--351Chr02:5253004..5253028 (25 bp)
ATAAGTGCCACTTTGCGCACGGTGA
LOC_Os02g10080
Os.4265.2.S1_a_at--390--4811Chr02:5253035..5253059 (25 bp)
GCTCGGCAAGCCTATGTTGATGGAT
LOC_Os02g10080
Os.4265.2.S1_a_at--684--6651Chr02:5253050..5253074 (25 bp)
GTTGATGGATAGCTCAATGCCTCCC
LOC_Os02g10080
Os.4265.2.S1_a_at--598--1991Chr02:5253138..5253162 (25 bp)
ACTCCAGCAAGCTTTGGCGCTTCGG
LOC_Os02g10080
Os.4265.2.S1_a_at--950--4891Chr02:5253156..5253180 (25 bp)
GCTTCGGCCACAGCCAAGATCAGTG
LOC_Os02g10080
Os.4265.2.S1_a_at--164--3471Chr02:5253176..5253200 (25 bp)
CAGTGTTGATGCATCTCTTGCAGGT
LOC_Os02g10080
Os.4265.2.S1_a_at--387--1611Chr02:5253259..5253283 (25 bp)
AGCTGGCCATCCGTGATCATGAATC
LOC_Os02g10080
Os.4265.2.S1_a_at--1147--6431Chr02:5253324..5253348 (25 bp)
GATCAGATCAAGAACGCTAGTGCAA
LOC_Os02g10080
Target Sequence 
AATCTTGGTGGTCCAGCTATTGCGCCGCCTCCAGGAAGAATGCCAATGGGAAATGCTGTTCCTGATGGGCCACCAACACC
CACTGTTAAGACTCGCCTGTGCAACAAGTATAACACTGCAGAGGGATGCAAATGGGGGGATAAGTGCCACTTTGCGCACG
GTGAGAGGGAGCTCGGCAAGCCTATGTTGATGGATAGCTCAATGCCTCCCCCAATGGGACCAAGGCCCACTGGTCACTTT
GCACCTCCACCAATGCCTAGCCCTGCCATGTCCACTCCAGCAAGCTTTGGCGCTTCGGCCACAGCCAAGATCAGTGTTGA
TGCATCTCTTGCAGGTGGCATAATCGGGAGGGGTGGGGTTAACACAAAGCAGATATCCAGAGTCACAGGGGCCAAGCTGG
CCATCCGTGATCATGAATCAGACACCAACTTGAAAAACATTGAGCTTGAGGGCACATTTGATCAGATCAAGAACGCTAGT
GCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4265.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis