Browse Element(s) Details


Os.42975.1.S1_at

Description gb:BE039193
DB_XREF= gi:8334209
DB_XREF=OA01A11
TID=Os.42975.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) similar to root cap protein (OJ1656_A11.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g737305/11Root cap family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73670Os.8761.3.S1_x_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.2.S1_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.1.S1_s_at10/111+43011790..43016248expressed protein
LOC_Os01g73680Os.27288.2.S1_x_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.2.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.1.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.1.S1_x_at9/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.2.S1_at1/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73690Os.42980.1.S1_at11/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73690Os.26995.1.S1_at1/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73700Os.42977.2.S1_x_at2/111+43027029..43028099transposon protein, putative, unclassified
LOC_Os01g73710Os.42977.2.S1_x_at11/111+43031130..43032223transposon protein, putative, unclassified
LOC_Os01g73720Os.42977.1.S1_at11/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73720Os.42977.2.S1_x_at4/111+43033372..43034829transposon protein, putative, unclassified, expressed
LOC_Os01g73730Os.42975.1.S1_x_at8/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73730Os.42975.1.S1_at5/111+43037666..43038849Root cap family protein, expressed
LOC_Os01g73740OsAffx.27387.1.S1_at5/111+43040151..43040659lipase class 3 family protein, putative
LOC_Os01g73750OsAffx.11843.1.S1_at11/111+43042572..43048410Leucine Rich Repeat family protein, expressed
LOC_Os01g73760Os.8794.3.S1_x_at11/111+43050362..43053433tRNA delta-isopentenylpyrophosphate transferase family protein, expressed
LOC_Os01g73770Os.40428.1.S1_at11/111+43054274..43055187CRT/DRE binding factor 1, putative, expressed
LOC_Os01g73780Os.8226.1.S1_at10/111+43062842..43064765expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42975.1.S1_at--754--3951Chr01:43038505..43038529 (25 bp)
CGGATCCACCACTACGGCAAGACCG
LOC_Os01g73730
Os.42975.1.S1_at--1146--8211Chr01:43038520..43038544 (25 bp)
GGCAAGACCGCCAAGGACACCCTCG
LOC_Os01g73730
Os.42975.1.S1_at--926--4511Chr01:43038760..43038784 (25 bp)
GCCCTCGGTTTTGCCTCGTAAATCG
LOC_Os01g73730
Os.42975.1.S1_at--853--3951Chr01:43038765..43038789 (25 bp)
CGGTTTTGCCTCGTAAATCGCCGAT
LOC_Os01g73730
Os.42975.1.S1_at--257--10391Chr01:43038768..43038792 (25 bp)
TTTTGCCTCGTAAATCGCCGATCAC
LOC_Os01g73730
Os.42975.1.S1_at--977--9371NONE
TCGTAAATCGCCGATCACTCGTTTA
NONE
Os.42975.1.S1_at--449--9831NONE
TAAATCGCCGATCACTCGTTTACTT
NONE
Os.42975.1.S1_at--733--531NONE
ATCGCCGATCACTCGTTTACTTCAA
NONE
Os.42975.1.S1_at--410--6451NONE
GATCACTCGTTTACTTCAACCAAGT
NONE
Os.42975.1.S1_at--600--1911NONE
ACTCGTTTACTTCAACCAAGTGAGA
NONE
Os.42975.1.S1_at--352--6831NONE
GTTTACTTCAACCAAGTGAGATACG
NONE
Target Sequence 
CGGATCCACCACTACGGCAAGACCGCCAAGGACACCCTCGTCCACCTCGACCTCGGCTACAAGTTCCACGCCCTCTCCGG
CGACGTCGACGGCGTGCTCGGCCAGACTTACCGCCCCACCTACGCCAACAGGCTCAACATCACCGCCAAGATGCCCATCA
TGGGCGGCGCCGACAAGTACCGCTCCTCGGGCCTNTTCTCGCCGGACTGCGCCGTCTNCAGGTNTNCACCGCNGNCGCAC
CGNCGGAGACCATGTNGCCCTCGGTTTTGCCTCGTAAATCGCCGATCACTCGTTTACTTCAACCAAGTGAGATACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis