Browse Element(s) Details


Os.43010.1.S1_x_at

Description gb:NM_189357.1
DB_XREF= gi:34905797
GEN=P0401G10.25
TID=Os.43010.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43010 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative nitrate transporter (P0401G10.25), mRNA.
PROD=putative nitrate transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g517801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51740Os.27691.2.S1_x_at1/114+30438298..30444203retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g51750NANA4+30447322..30451287retrotransposon protein, putative, unclassified
LOC_Os04g51760OsAffx.19599.1.S1_x_at11/114+30452765..30454807hypothetical protein
LOC_Os04g51760OsAffx.19599.1.S1_at11/114+30452765..30454807hypothetical protein
LOC_Os04g51760Os.53659.1.S1_at1/114+30452765..30454807hypothetical protein
LOC_Os04g51770Os.32540.1.S1_at11/114+30459725..30462708expressed protein
LOC_Os04g51780Os.8738.1.S1_at11/114+30463093..30466217expressed protein
LOC_Os04g51780Os.43010.1.S1_x_at1/114+30463093..30466217expressed protein
LOC_Os04g51780Os.27540.2.S1_x_at1/114+30463093..30466217expressed protein
LOC_Os04g51786OsAffx.4150.1.S1_x_at11/114+30466347..30468780expressed protein
LOC_Os04g51786Os.8447.1.S1_at11/114+30466347..30468780expressed protein
LOC_Os04g51792Os.8921.1.S1_at11/114+30469040..30470709PAP_fibrillin family protein, expressed
LOC_Os04g51800Os.48089.1.S1_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800Os.48089.2.S1_x_at11/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.2.S1_at9/114+30483416..30491917hypothetical protein
LOC_Os04g51800OsAffx.26564.1.S1_at2/114+30483416..30491917hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43010.1.S1_x_at--1147--3731Chr01:42691369..42691393 (25 bp)
CTCAACGTCGCCAGCATGGCGGTCG
NONE
Os.43010.1.S1_x_at--1116--4052Chr04:30464672..30464691 (20 bp)
CGATGTCGGTGCTGTGGCTGGTGCC
LOC_Os04g51780
Os.43010.1.S1_x_at--1064--8151Chr01:42691206..42691230 (25 bp)
GGAACACGGCGCTGTTCTACGGCGA
NONE
Os.43010.1.S1_x_at--879--4711Chr01:42691043..42691067 (25 bp)
GCTGGACTGCGTGTACTGGACGCTC
NONE
Os.43010.1.S1_x_at--168--9151Chr01:42691036..42691060 (25 bp)
TGCGTGTACTGGACGCTCGCCGTGC
NONE
Os.43010.1.S1_x_at--16--9331Chr01:42691011..42691035 (25 bp)
TCGCCGCCGTCAACTTGGGCTACTT
NONE
Os.43010.1.S1_x_at--442--7091Chr01:42691003..42691027 (25 bp)
GTCAACTTGGGCTACTTCCTTTTGT
NONE
Os.43010.1.S1_x_at--263--10851Chr01:42690997..42691021 (25 bp)
TTGGGCTACTTCCTTTTGTGCGCCA
NONE
Os.43010.1.S1_x_at--469--10391Chr01:42690984..42691008 (25 bp)
TTTTGTGCGCCACCACGTACAAGTA
NONE
Os.43010.1.S1_x_at--618--4551Chr01:42690978..42691002 (25 bp)
GCGCCACCACGTACAAGTACAACAA
NONE
Os.43010.1.S1_x_at--923--6951Chr01:42690962..42690986 (25 bp)
GTACAACAATTACGGTGGTGACGAT
NONE
Target Sequence 
CTCAACGTCGCCAGCATGGCGGTCGCGGCCCTCGTCGAGCGGAGGCGGATCGGCGCCGCGCGCGGCCGCGCCGCGGCGGC
GGCGGCGGTCGTGCCGATGTCGGTGCTGTGGCTGGTGCCGCAGCTGGCGCTGACCGGCGCGGAGGAGGCGCTGCACCTGC
CGGGGAACACGGCGCTGTTCTACGGCGAGCTGCCGGCGTCGCTGCGCGGCACGGCGACGGCGATGCCGCCGCTGTTCATC
GCGGCGGGGTCGTACCTGAGCGCGGCGGCGGTGGACGCGGTGAAGAGGGGCACGACGTGGCTGCCCGACGACCTGAACGC
GTCGCGGCTGGACTGCGTGTACTGGACGCTCGCCGTGCTCGCCGCCGTCAACTTGGGCTACTTCCTTTTGTGCGCCACCA
CGTACAAGTACAACAATTACGGTGGTGACGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43010.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis