Browse Element(s) Details


Os.43929.1.S1_s_at

Description gb:AU222487
DB_XREF= gi:15008099
DB_XREF=AU222487
CLONE=C10342
TID=Os.43929.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.43929 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OSJNBa0090O10.26), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0247011/11expressed protein
LOC_Os06g154305/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02430OsAffx.22287.1.S1_at11/113+839585..841122pentatricopeptide, putative, expressed
LOC_Os03g02440Os.26476.1.S2_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S1_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.2.S1_x_at11/113+849168..854838expressed protein
LOC_Os03g02440Os.26476.1.S2_a_at11/113+849168..854838expressed protein
LOC_Os03g02450Os.8847.1.S1_s_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.47754.1.S1_at11/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02450Os.8847.1.S1_at8/113+857183..859798pyridoxine 5'-phosphate oxidase, putative, expressed
LOC_Os03g02460Os.6192.1.S1_at11/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02460Os.4281.1.S1_x_at1/113+863026..865288oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os03g02470Os.43929.1.S1_s_at11/113+865605..867863expressed protein
LOC_Os03g02470Os.8823.1.S1_at11/113+865605..867863expressed protein
LOC_Os03g02480OsAffx.24943.1.S1_at11/113+884501..88804260Kd inner membrane protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43929.1.S1_s_at--932--8772Chr06:8766632..8766655 (24 bp)
TGTTAGACTTTGGTCGGCAGGGATA
LOC_Os06g15430
Os.43929.1.S1_s_at--431--1891Chr03:865929..865953 (25 bp)
ACTTTGGTCGGCAGGGATATTGTTA
LOC_Os03g02470
Os.43929.1.S1_s_at--928--6511Chr03:865914..865938 (25 bp)
GATATTGTTAGTGTTCCTCAGATTT
LOC_Os03g02470
Os.43929.1.S1_s_at--776--6311Chr03:865886..865910 (25 bp)
GATGACTTCCATGGCAATCATTGGT
LOC_Os03g02470
Os.43929.1.S1_s_at--398--433Chr02:9449997..9450016 (20 bp)
ATCATTGGTTGAGTCCGGTGAAGCC
NONE
Os.43929.1.S1_s_at--85--9851Chr03:865834..865858 (25 bp)
TACGACTCAACTCCAAAGCTCAATT
LOC_Os03g02470
Os.43929.1.S1_s_at--925--2691Chr03:865819..865843 (25 bp)
AAGCTCAATTAGTGCCAAATCCGTG
LOC_Os03g02470
Os.43929.1.S1_s_at--596--10433Chr10:14728003..14728027 (25 bp)
TTAGTGCCAAATCCGTGGAGGCAGC
NONE
Os.43929.1.S1_s_at--1064--8251Chr03:865773..865797 (25 bp)
GGCAGGTCAAATGGGAAGCACGTTT
LOC_Os03g02470
Os.43929.1.S1_s_at--786--5372Chr06:8766455..8766479 (25 bp)
GAAGCACGTTTGAAGAGGCCCTTGG
LOC_Os06g15430
Os.43929.1.S1_s_at--566--8992Chr06:8766445..8766469 (25 bp)
TGAAGAGGCCCTTGGGTGCAATCGT
LOC_Os06g15430
Target Sequence 
TGTTAGACTTTGGTCGGCAGGGATATTGTTAGTGTTCCTCAGATTTAACGATGACTTCCATGGCAATCATTGGTTGAGTC
CGGTGAAGCCACCAACATATCTACGACTCAACTCCAAAGCTCAATTAGTGCCAAATCCGTGGAGGCAGCCGGAGGGATCG
CTGGCAGGTCAAATGGGAAGCACGTTTGAAGAGGCCCTTGGGTGCAATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43929.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis