Browse Element(s) Details


Os.43946.1.S1_at

Description gb:AK111855.1
DB_XREF= gi:37988518
TID=Os.43946.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.43946 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) protein kinase (OSJNBa0071M09.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033016N09, full insert sequence.
FL= gb:AK111855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1626011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16210Os.30077.1.S1_at11/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.2.S1_at8/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16210Os.30077.3.S1_at5/113+8917534..8920364Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220OsAffx.3252.1.S1_at11/113+8924117..8926965Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16220Os.16159.1.S1_at10/113+8924117..8926965Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16230Os.34878.1.S1_a_at11/113+8929080..8931135Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16230OsAffx.17694.1.S1_x_at1/113+8929080..8931135Tropinone reductase homolog At1g07440, putative, expressed
LOC_Os03g16250Os.22646.1.S1_at10/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.22646.1.S1_x_at10/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250OsAffx.21756.5.A1_x_at3/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250OsAffx.16205.1.S1_at2/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.26442.1.S1_at1/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16250Os.52979.1.S1_at1/113+8939949..8942368transposon protein, putative, unclassified
LOC_Os03g16260Os.43946.1.S1_at11/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16260Os.43946.3.S1_x_at10/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16260OsAffx.25423.2.S1_x_at6/113+8943078..8945859Protein kinase domain containing protein, expressed
LOC_Os03g16270NANA3+8947963..8948547hypothetical protein
LOC_Os03g16280NANA3+8950820..8953624retrotransposon protein, putative, unclassified
LOC_Os03g16290Os.32462.1.S1_a_at10/113+8962056..8963231fringe protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43946.1.S1_at--461--9691Chr03:8943580..8943604 (25 bp)
TCACTACTCCCTGAGTATAATTCAG
LOC_Os03g16260
Os.43946.1.S1_at--1003--6071Chr03:8943568..8943592 (25 bp)
GAGTATAATTCAGTCCTTCCCTGAA
LOC_Os03g16260
Os.43946.1.S1_at--742--3431Chr03:8943558..8943582 (25 bp)
CAGTCCTTCCCTGAAAATGGTGAAA
LOC_Os03g16260
Os.43946.1.S1_at--811--2951Chr03:8943543..8943567 (25 bp)
AATGGTGAAACGCTGAAACTGCTAA
LOC_Os03g16260
Os.43946.1.S1_at--451--5551Chr03:8943537..8943561 (25 bp)
GAAACGCTGAAACTGCTAAATGTTC
LOC_Os03g16260
Os.43946.1.S1_at--387--251Chr03:8943505..8943529 (25 bp)
ATAGTCGTAGAATCACATGTGCCTT
LOC_Os03g16260
Os.43946.1.S1_at--1108--3071Chr03:8943495..8943519 (25 bp)
AATCACATGTGCCTTATTTCCTGAA
LOC_Os03g16260
Os.43946.1.S1_at--836--2111Chr03:8943491..8943515 (25 bp)
ACATGTGCCTTATTTCCTGAATAAA
LOC_Os03g16260
Os.43946.1.S1_at--272--5511Chr03:8943463..8943487 (25 bp)
GAACAATAACCACATAACCAGAGAA
LOC_Os03g16260
Os.43946.1.S1_at--890--2731Chr03:8943407..8943431 (25 bp)
AAGAAGTTTCTTTCCTCCTATCAGA
LOC_Os03g16260
Os.43946.1.S1_at--721--10291Chr03:8943397..8943421 (25 bp)
TTTCCTCCTATCAGATCCTGAAGCA
LOC_Os03g16260
Target Sequence 
TCACTACTCCCTGAGTATAATTCAGTCCTTCCCTGAAAATGGTGAAACGCTGAAACTGCTAAATGTTCAGTAGAAATAGT
CGTAGAATCACATGTGCCTTATTTCCTGAATAAAATAGAACAATAACCACATAACCAGAGAACAATATTTGATGTGTGAC
ACATAAATGTGAAAAGAAGTTTCTTTCCTCCTATCAGATCCTGAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis