Browse Element(s) Details


Os.4418.1.S1_at

Description gb:AK071143.1
DB_XREF= gi:32981166
TID=Os.4418.1
CNT=52
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081F24, full insert sequence.
FL= gb:AK061681.1 gb:AK071143.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4798011/11ATP synthase beta chain, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g47950Os.55729.1.S1_at11/115+27402540..27404322UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g47960OsAffx.15140.1.S1_at11/115+27415529..27416301expressed protein
LOC_Os05g47970Os.54133.1.S1_at10/115+27421663..27426068Microtubule associated protein containing protein, expressed
LOC_Os05g47980Os.4418.1.S1_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.4418.1.S2_at11/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47980Os.10496.2.S1_x_at2/115+27426537..27430064ATP synthase beta chain, mitochondrial precursor, putative, expressed
LOC_Os05g47989NANA5+27431491..27432512NA
LOC_Os05g48000Os.55288.1.S1_at11/115+27437755..27438506expressed protein
LOC_Os05g48010Os.55636.1.S1_at11/115+27441515..27442971Myb-like DNA-binding domain containing protein, expressed
LOC_Os05g48020Os.12395.1.S1_at11/115+27446984..27450497Syntaxin 72, putative, expressed
LOC_Os05g48030Os.54375.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030OsAffx.15141.3.S1_s_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.50851.1.S1_at11/115+27451010..27456216Anti-silencing protein 1, putative, expressed
LOC_Os05g48030Os.8747.1.S2_x_at1/115+27451010..27456216Anti-silencing protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015986biological_processATP synthesis coupled proton transport
GO:0005739cellular_componentmitochondrion
GO:0005754cellular_componentproton-transporting ATP synthase, catalytic core (sensu Eukaryota)
GO:0009544cellular_componentchloroplast ATP synthase complex
GO:0015078molecular_functionhydrogen ion transporter activity
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4418.1.S1_at--1018--7551Chr05:27428843..27428867 (25 bp)
GGGCCACGCTTGGACGTATCATGAA
LOC_Os05g47980
Os.4418.1.S1_at--9--5611Chr05:27428683..27428811 (25 bp)
GACATAACAACGAACCACTTCCTTC
LOC_Os05g47980
Os.4418.1.S1_at--925--6651Chr05:27428632..27428656 (25 bp)
GTTGAGCAAGCCACAGAACAGCAAA
LOC_Os05g47980
Os.4418.1.S1_at--174--131Chr05:27428480..27428500 (21 bp)
ATTAAGGTTGTGGATCTGCTTGCGC
LOC_Os05g47980
Os.4418.1.S1_at--670--9071Chr05:27428464..27428488 (25 bp)
TGCTTGCGCCCTACCAAAGAGGTGG
LOC_Os05g47980
Os.4418.1.S1_at--835--2791Chr05:27428438..27428462 (25 bp)
AAGATCGGTCTTTTTGGTGGTGCAG
LOC_Os05g47980
Os.4418.1.S1_at--677--8591Chr05:27428251..27428275 (25 bp)
TGGTGTTGGTGAACGTACCCGTGAA
LOC_Os05g47980
Os.4418.1.S1_at--148--5571Chr05:27428199..27428223 (25 bp)
GAAAGTGGTGTCATCAAGCTAGGTG
LOC_Os05g47980
Os.4418.1.S1_at--1094--9371Chr05:27428031..27428055 (25 bp)
TCGTGTTGGGTTGACCGGTTTGACT
LOC_Os05g47980
Os.4418.1.S1_at--489--5831Chr05:27428019..27428043 (25 bp)
GACCGGTTTGACTGTTGCGGAACAT
LOC_Os05g47980
Os.4418.1.S1_at--352--3951Chr05:27428002..27428026 (25 bp)
CGGAACATTTCCGTGATGCCGAAGG
LOC_Os05g47980
Target Sequence 
GGGCCACGCTTGGACGTATCATGAATGTTATTGGTGAGCCAATTGATGAGAAGGGTGACATAACAACGAACCACTTCCTT
CCCATCCATCGTGAGGCGCCTGCTTTTGTTGAGCAAGCCACAGAACAGCAAATTCTTGTTACTGGAATTAAGGTTGTGGA
TCTGCTTGCGCCCTACCAAAGAGGTGGAAAGATCGGTCTTTTTGGTGGTGCAGGAGTCGGCAAAACTGTCCTTATTATGG
AGTTGATCAACAATGTTGCTAAGGCCCATGGTGGTTTCTCTGTGTTTGCTGGTGTTGGTGAACGTACCCGTGAAGGTAAT
GATCTTTACAGGGAAATGATTGAAAGTGGTGTCATCAAGCTAGGTGACAAACAGAGTGAAAGCAAGTGTGCTCTTGTCTA
CGGGCAAATGAATGAGCCCCCGGGTGCTCGTGCTCGTGTTGGGTTGACCGGTTTGACTGTTGCGGAACATTTCCGTGATG
CCGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis