Browse Element(s) Details


Os.44781.1.S1_at

Description gb:NM_185572.1
DB_XREF= gi:34898229
GEN=P0034A04.26
TID=Os.44781.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44781 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative RanBP7importin-betaCse1p homolog (P0034A04.26), mRNA.
PROD=putative RanBP7importin-betaCse1p homolog
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4926011/11Importin-beta N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g49210Os.30497.1.S1_at11/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49210Os.7039.1.S1_at11/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49210Os.30497.1.S2_at10/117+29463490..29473794Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g49220OsAffx.16769.1.S1_at10/117+29474545..29476839Eukaryotic translation initiation factor 2 alpha subunit, eIF2, putative
LOC_Os07g49220Os.6961.1.S1_a_at1/117+29474545..29476839Eukaryotic translation initiation factor 2 alpha subunit, eIF2, putative
LOC_Os07g49230Os.33799.1.S1_at11/117+29477078..29481906Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os07g49240Os.27462.1.S1_at11/117+29482828..29485662ser-thr protein kinase, putative, expressed
LOC_Os07g49250Os.4375.1.S1_a_at11/117+29488318..29490288Pyruvate decarboxylase isozyme 3, putative, expressed
LOC_Os07g49260Os.44781.1.S1_at11/117+29494265..29502340Importin-beta N-terminal domain containing protein, expressed
LOC_Os07g49270Os.8779.1.S1_at11/117+29503690..29510383AMP deaminase, putative, expressed
LOC_Os07g49280Os.38120.1.S1_at11/117+29509905..29514638expressed protein
LOC_Os07g49290OsAffx.21462.1.S1_at11/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.3.S1_x_at2/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49290OsAffx.21462.2.S1_x_at1/117+29517758..29520452acetyltransferase, GNAT family protein, expressed
LOC_Os07g49300Os.44779.2.S1_x_at11/117+29520749..29528909transducin family protein, putative, expressed
LOC_Os07g49300Os.44779.1.S1_at11/117+29520749..29528909transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000059biological_processprotein import into nucleus, docking
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0005737cellular_componentcytoplasm
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44781.1.S1_at--346--2211Chr07:29501232..29501256 (25 bp)
ACAACTGTCCGTGCATCTGCGGGAG
LOC_Os07g49260
Os.44781.1.S1_at--744--4631Chr07:29501256..29501280 (25 bp)
GCGATTCTTGCTAGACTTCTGGTGA
LOC_Os07g49260
Os.44781.1.S1_at--623--2351Chr07:29501300..29501324 (25 bp)
AAAGCTATTATCAGAGCCTGCCCTT
LOC_Os07g49260
Os.44781.1.S1_at--1142--9151Chr07:29501318..29501342 (25 bp)
TGCCCTTCTGACAAGCATTCAACAA
LOC_Os07g49260
Os.44781.1.S1_at--397--7051Chr07:29501355..29501379 (25 bp)
GTAAACAATAATCTGCTGCTCTCTT
LOC_Os07g49260
Os.44781.1.S1_at--657--9111Chr07:29501368..29501392 (25 bp)
TGCTGCTCTCTTTGGTTGATATGTG
LOC_Os07g49260
Os.44781.1.S1_at--487--7451Chr07:29501855..29501879 (25 bp)
GTGTCTGCACTACTGTTATCATGGG
LOC_Os07g49260
Os.44781.1.S1_at--145--1591Chr07:29502030..29502054 (25 bp)
AGCTCTTCTTGGCTTGGCAATGATA
LOC_Os07g49260
Os.44781.1.S1_at--66--8131Chr07:29502181..29502205 (25 bp)
GGACTCGGATCCTATCAAGCAAGCT
LOC_Os07g49260
Os.44781.1.S1_at--281--5171Chr07:29502199..29502223 (25 bp)
GCAAGCTTCTCTAGAGGACATGCTA
LOC_Os07g49260
Os.44781.1.S1_at--409--5791Chr07:29502260..29502284 (25 bp)
GACGCGACTTTCAATGCTGCCATCG
LOC_Os07g49260
Target Sequence 
ACAACTGTCCGTGCATCTGCGGGAGCGATTCTTGCTAGACTTCTGGTGATGAACACAAACTTTACAGGAAAGCTATTATC
AGAGCCTGCCCTTCTGACAAGCATTCAACAAACAGGGATTTCTGTAAACAATAATCTGCTGCTCTCTTTGGTTGATATGT
GGATTGACAAGGTAGATGATGCGAATGTTATACAACAGAAAGAATATGCAATGGCTCTTTCTGTAATTTTAACTTTACAT
GTACCTCAAGTCATTGACAAACTTGATGACATATTAAGTGTCTGCACTACTGTTATCATGGGGGGCCGTGAAGTGAAGAC
TGAGGATGATACTAGTGGTGATATTACAAGCTCTTCTTGGCTTGGCAATGATAATTCAGGTTATTCTAACACAAGCAAAG
AGTTGAGAAAGCGACAAGTAAAGGACTCGGATCCTATCAAGCAAGCTTCTCTAGAGGACATGCTAAGAGATAACTTAAAA
GCATGTGCAGCACTCCACGGGGACGCGACTTTCAATGCTGCCATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44781.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis