Browse Element(s) Details

Os.44810.1.S1_at

Description

gb:CA766672
DB_XREF= gi:27548782
DB_XREF=AF53-Rpf_12_F12_T7_036.ab1
CLONE=C0004356
TID=Os.44810.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44810 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0038F22.19 (OSJNBa0038F22.19), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03750	11/11	dehydration-responsive family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03690	Os.5600.1.S1_s_at	11/11	6	+	1454386..1457554	RNA recognition motif family protein, expressed
LOC_Os06g03690	OsAffx.27444.1.S1_at	11/11	6	+	1454386..1457554	RNA recognition motif family protein, expressed
LOC_Os06g03700	Os.34161.2.S1_x_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03700	Os.34161.1.S1_a_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03700	Os.34161.1.S1_at	11/11	6	+	1458769..1463334	oligopeptide transporter 9, putative, expressed
LOC_Os06g03710	Os.31950.1.S1_at	11/11	6	+	1464501..1467594	GRAS family transcription factor containing protein, expressed
LOC_Os06g03720	Os.9043.1.S1_at	11/11	6	+	1469866..1471141	Ribonucleoside-diphosphate reductase small chain, putative, expressed
LOC_Os06g03740	OsAffx.27445.1.S1_at	11/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740	OsAffx.27445.1.S1_x_at	11/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03740	OsAffx.27445.2.S1_x_at	7/11	6	+	1475240..1476237	Formimidoyltransferase-cyclodeaminase, putative, expressed
LOC_Os06g03750	Os.44810.1.S1_at	11/11	6	+	1478059..1484508	dehydration-responsive family protein, putative, expressed
LOC_Os06g03750	Os.52574.2.S1_x_at	1/11	6	+	1478059..1484508	dehydration-responsive family protein, putative, expressed
LOC_Os06g03760	Os.4272.1.S1_a_at	11/11	6	+	1484975..1489635	LMBR1 integral membrane family protein, putative, expressed
LOC_Os06g03770	Os.10814.1.S1_a_at	11/11	6	+	1491885..1501584	ATP-binding cassette sub-family B member 7, mitochondrial, putative, expressed
LOC_Os06g03780	OsAffx.10361.1.S1_at	11/11	6	+	1503212..1510787	Nucleolar protein 10, putative, expressed
LOC_Os06g03780	Os.50592.1.S1_x_at	11/11	6	+	1503212..1510787	Nucleolar protein 10, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.44810.1.S1_at--1081--507	1	Chr06:1483342..1483366 (25 bp)	GCAGCCTTGGAAGCAGCGTCACGGT	LOC_Os06g03750
Os.44810.1.S1_at--886--333	1	Chr06:1483361..1483385 (25 bp)	CACGGTGGACACCTTTATCAAGGAT	LOC_Os06g03750
Os.44810.1.S1_at--1128--801	1	Chr06:1483396..1483420 (25 bp)	GGAGGAGACGAGTCGATCGCTACAA	LOC_Os06g03750
Os.44810.1.S1_at--849--113	1	Chr06:1483406..1483430 (25 bp)	AGTCGATCGCTACAAGGGCGTCAGC	LOC_Os06g03750
Os.44810.1.S1_at--645--449	1	Chr06:1483450..1483474 (25 bp)	GCCGGTACCGGAATCTGCTGGACAT	LOC_Os06g03750
Os.44810.1.S1_at--574--937	1	Chr06:1483510..1483534 (25 bp)	TCGACGATCCTGTCTGGGTGATGAA	LOC_Os06g03750
Os.44810.1.S1_at--239--461	1	Chr06:1483583..1483607 (25 bp)	GCGAGGGCTCATCGGAACGTACCAA	LOC_Os06g03750
Os.44810.1.S1_at--302--171	1	Chr06:1483603..1484007 (25 bp)	ACCAAGATTGGTGTGAGGCGATGTC	LOC_Os06g03750
Os.44810.1.S1_at--533--867	1	Chr06:1483994..1484018 (25 bp)	TGTGAGGCGATGTCAACTTATCCTA	LOC_Os06g03750
Os.44810.1.S1_at--1079--691	1	Chr06:1484023..1484047 (25 bp)	GTATGATCTGATCCATGCGTACTCC	LOC_Os06g03750
Os.44810.1.S1_at--1138--1077	1	Chr06:1484303..1484327 (25 bp)	TTGATCATGAGGATGGGCCGATGCA	LOC_Os06g03750

Target Sequence

GCAGCCTTGGAAGCAGCGTCACGGTGGACACCTTTATCAAGGATTCTGAGATGTGGAGGAGACGAGTCGATCGCTACAAG
GGCGTCAGCGGCGGGCTGGCCGAGAAAGGCCGGTACCGGAATCTGCTGGACATGAACGCCGGCCTCGGCGGCTTCGCGGC
GGCGCTCGTCGACGATCCTGTCTGGGTGATGAACGTCGTGCCGACGGCCGCCGTTGCCAACACGCTCGGCGTGATCTACG
AGCGAGGGCTCATCGGAACGTACCAAGATTGGTGTGAGGCGATGTCAACTTATCCTANGACGTATGATCTGATCCATGCG
TACTCCCTGNTCACAATGTACAAAGACAGATGTGAAATGGAGGACATTTTGCTGGAGATGGNACCGTGTGCTGANGCCAG
AANGCACGGTAATATTCANAGACGATGNTTGATGTCCTGGTGAANATCAAGAACATCGCANACGGGNATGAGATGGGAGA
GCAGGATCGTTGATCATGAGGATGGGCCGATGCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis