Browse Element(s) Details

Os.4513.1.S1_at

Description

gb:AK061552.1
DB_XREF= gi:32971570
TID=Os.4513.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.4513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) ESTs AU082454(S3638),D41267(S3638) correspond to a region of the predicted gene.~Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone T5K18; hypothetical protein (AL022580) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B09, full insert sequence.
FL= gb:AK098848.1 gb:AK061552.1 gb:AK122142.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02440	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02380	Os.51795.1.S1_at	11/11	6	+	810040..815535	RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02380	Os.12628.1.S1_at	11/11	6	+	810040..815535	RuBisCO subunit binding-protein beta subunit, chloroplast precursor, putative, expressed
LOC_Os06g02390	OsAffx.4696.1.S1_at	11/11	6	+	818374..819357	ADP-ribosylation factor 1, putative
LOC_Os06g02400	Os.44826.1.S1_at	5/11	6	+	824557..828064	F-box domain containing protein
LOC_Os06g02410	OsAffx.30517.2.A1_at	11/11	6	+	827718..829762	expressed protein
LOC_Os06g02410	Os.4509.1.S1_x_at	10/11	6	+	827718..829762	expressed protein
LOC_Os06g02420	Os.4510.1.S1_at	6/11	6	+	831842..833940	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02430	Os.15602.1.S1_x_at	11/11	6	+	834630..838033	expressed protein
LOC_Os06g02430	Os.15602.1.S1_at	10/11	6	+	834630..838033	expressed protein
LOC_Os06g02440	Os.4513.1.S1_at	11/11	6	+	840323..843186	expressed protein
LOC_Os06g02450	Os.53204.1.S1_at	11/11	6	+	845527..846086	expressed protein
LOC_Os06g02450	OsAffx.10364.1.S1_x_at	11/11	6	+	845527..846086	expressed protein
LOC_Os06g02460	Os.55439.1.S1_at	11/11	6	+	849898..851193	expressed protein
LOC_Os06g02460	OsAffx.1579.1.S1_x_at	2/11	6	+	849898..851193	expressed protein
LOC_Os06g02470	Os.4516.1.S1_a_at	11/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_at	9/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02470	OsAffx.1579.1.S1_x_at	7/11	6	+	851434..853577	ozone-responsive stress-related protein, putative, expressed
LOC_Os06g02480	Os.48019.1.S1_at	4/11	6	+	854756..856968	hypothetical protein
LOC_Os06g02490	Os.4518.1.S1_a_at	11/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02490	Os.4518.2.S1_x_at	9/11	6	+	859909..861567	Acyl-CoA-binding protein, putative, expressed
LOC_Os06g02500	Os.20570.1.S1_x_at	11/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02500	Os.20570.2.S1_at	10/11	6	+	863274..865969	Superoxide dismutase, chloroplast, putative, expressed
LOC_Os06g02510	Os.12590.1.S1_at	11/11	6	+	866370..868825	60S ribosomal protein L13-2, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4513.1.S1_at--997--45	1	Chr06:841508..841528 (21 bp)	ATCTCATTCATCGTGTCTTGGGCCA	LOC_Os06g02440
Os.4513.1.S1_at--683--1081	1	Chr06:840891..840913 (23 bp)	TTGGGCCACTTTCATAATCGCGTTC	LOC_Os06g02440
Os.4513.1.S1_at--470--583	1	Chr06:840855..840879 (25 bp)	GACCGGAGCTGCACTTAACGATCAA	LOC_Os06g02440
Os.4513.1.S1_at--196--851	1	Chr06:840807..840831 (25 bp)	TGGCAGCTTCTGCTACGTTGTCAAG	LOC_Os06g02440
Os.4513.1.S1_at--660--1005	1	Chr06:840727..840751 (25 bp)	TAGTTTACTACGTTGCCCTATCATC	LOC_Os06g02440
Os.4513.1.S1_at--531--213	1	Chr06:840630..840654 (25 bp)	ACAGAGCAGCGAACCGGTGTTTGTC	LOC_Os06g02440
Os.4513.1.S1_at--421--95	1	Chr06:840601..840625 (25 bp)	AGGACACCTACAATCGGCAGCAATT	LOC_Os06g02440
Os.4513.1.S1_at--834--47	1	Chr06:840563..840587 (25 bp)	ATCTGTGCAAGCTGTTTCGAGGGCC	LOC_Os06g02440
Os.4513.1.S1_at--127--1063	1	Chr06:840548..840572 (25 bp)	TTCGAGGGCCATTCTGATACATTAT	LOC_Os06g02440
Os.4513.1.S1_at--1089--685	1	Chr06:840523..840547 (25 bp)	GTTTGGTTTGTATAGGCCTCCAGGT	LOC_Os06g02440
Os.4513.1.S1_at--900--671	1	Chr06:840410..840434 (25 bp)	GTTCTGCTTCATCACAGCGGATATT	LOC_Os06g02440

Target Sequence

ATCTCATTCATCGTGTCTTGGGCCACTTTCATAATCGCGTTCCTTCTCCTACTGACCGGAGCTGCACTTAACGATCAACG
GGGTGAGGAGAACATGTACTTTGGCAGCTTCTGCTACGTTGTCAAGCCAGGGGTCTTTTCTGGAGGGGCAGTGCTCTCAC
TTGCCAGCGTGGCACTGGCAATAGTTTACTACGTTGCCCTATCATCGGCGAAAAGTCCACCAAATTGGGGTCCCCAGCAG
AACCAAGGCATCGCCATGGGCCAACCTGTGATCCCTCCACAGAGCAGCGAACCGGTGTTTGTCCACGAGGACACCTACAA
TCGGCAGCAATTCCCATAAATCATGATCTGTGCAAGCTGTTTCGAGGGCCATTCTGATACATTATGTTTGGTTTGTATAG
GCCTCCAGGTTAGAACAGTAGCAGTAACAATTGTTGTTAGGTAGAGTCATGTTTTTTNGCTTTNTTCTTCCCCCTCTTTC
TTGAGCGCTACTGTCGCACGTTCTGCTTCATCACAGCGGATATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis