Browse Element(s) Details


Os.45507.1.S1_at

Description gb:CA765072
DB_XREF= gi:27546976
DB_XREF=AF53-Rpf_06_A14_T7_049.ab1
CLONE=C0001934
TID=Os.45507.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45507 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ATP-dependent RNA helicase A (P0494A10.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g156601/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15630Os.117.2.S1_x_at11/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15630Os.117.1.S1_at10/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15640Os.4387.1.S1_at10/111+8789456..8794160No apical meristem protein, expressed
LOC_Os01g15650NANA1+8802509..8805319transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g15660Os.27385.2.S1_x_at11/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.27385.3.S1_at9/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.45507.1.S1_at1/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15669OsAffx.11065.1.S1_x_at11/111+8813692..8815120Transferase family protein
LOC_Os01g15669OsAffx.11065.1.S1_at11/111+8813692..8815120Transferase family protein
LOC_Os01g15680Os.53832.1.S1_at10/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.11065.1.S1_at3/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.11065.1.S1_x_at2/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.27865.1.S1_x_at1/111+8817938..8819411expressed protein
LOC_Os01g15690Os.35046.2.S1_x_at11/111+8819792..8824980retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g15690Os.35046.1.S1_at9/111+8819792..8824980retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g15700OsAffx.27865.1.S1_x_at10/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700Os.53832.1.S1_at8/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700OsAffx.9725.1.S1_at3/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15700OsAffx.27865.2.S1_at1/111+8826346..8830871transposon protein, putative, Pong sub-class
LOC_Os01g15709OsAffx.11065.1.S1_at11/111+8832376..8833804Transferase family protein
LOC_Os01g15709OsAffx.11065.1.S1_x_at11/111+8832376..8833804Transferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45507.1.S1_at--472--2571Chr01:1026414..1026438 (25 bp)
AACTGGCTGACAGGAGGAGCTCCCT
NONE
Os.45507.1.S1_at--1104--6171Chr01:1026427..1026451 (25 bp)
GAGGAGCTCCCTCCGACTCAAGAGA
NONE
Os.45507.1.S1_at--84--771Chr01:1026471..1026495 (25 bp)
ATGTCCATGCTTCAGAAACCACCAC
NONE
Os.45507.1.S1_at--596--10511Chr01:1026481..1026505 (25 bp)
TTCAGAAACCACCACGCAGGAAGAG
NONE
Os.45507.1.S1_at--11--3331Chr01:1026536..1026560 (25 bp)
CACTTTGGCATTTCCTTTCTATGTA
NONE
Os.45507.1.S1_at--339--10672Chr01:1026547..1026571 (25 bp)
TTCCTTTCTATGTAGTAGCAACCAG
NONE
Os.45507.1.S1_at--447--9911Chr01:1026617..1026641 (25 bp)
TAGCTTAGGGTGCTCTAAACACAGC
NONE
Os.45507.1.S1_at--344--5191Chr01:1026640..1026664 (25 bp)
GCAATTTTGTTAGTGTGCCCGGAAA
NONE
Os.45507.1.S1_at--837--3871Chr01:1026659..1026683 (25 bp)
CGGAAATTTTACAGGGCGCTGGAGT
NONE
Os.45507.1.S1_at--138--1011Chr01:1026778..1026802 (25 bp)
AGGATCATTTCACACAATGCCCACT
NONE
Os.45507.1.S1_at--131--3031Chr01:1026793..1026817 (25 bp)
AATGCCCACTATGTTGTCCACGATT
NONE
Target Sequence 
AACTGGCTGACAGGAGGAGCTCCCTCCGACTCAAGAGATCCCCANGACATGGATCACATGTCCATGCTTCAGAAACCACC
ACGCAGGAAGAGGCATCATCATAGGAGGGGTTGATCAGAGGNCACTTTGGCATTTCCTTTCTATGTAGTAGCAACCAGGG
GTAGTCAGCATTAGAAGCTAAAAGCTAGCAACAAAAATAATTGTAGCTTAGGGTGCTCTAAACACAGCAATTTTGTTAGT
GTGCCCGGAAATTTTACAGGGCGCTGGAGTTTGGCCGTGGCAAAAGGGAAATCTACAGGGGAAGACTGACTGTATTGGTG
AGAGTCTGCAAGGAGTACAATCCATTTTTGTTTTAGTAGATTTTAGGATCATTTCACACAATGCCCACTATGTTGTCCAC
GATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis