Browse Element(s) Details


Os.45831.2.S1_x_at

Description gb:NM_183553.1
DB_XREF= gi:34894233
GEN=OSJNBb0032H19.20
TID=Os.45831.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0032H19.20 (OSJNBb0032H19.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0032H19.20 (OSJNBb0032H19.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0227011/11hypothetical protein
LOC_Os01g0228011/11NB-ARC domain containing protein
LOC_Os06g031809/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02240OsAffx.25962.1.S1_at9/111+675580..681396transposon protein, putative, Mutator sub-class
LOC_Os01g02250OsAffx.23035.1.S1_x_at11/111+686594..690815NB-ARC domain containing protein
LOC_Os01g02260NANA1+691518..692915retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g02270Os.45831.2.S1_x_at11/111+697335..702472hypothetical protein
LOC_Os01g02270Os.45831.2.S1_at11/111+697335..702472hypothetical protein
LOC_Os01g02270Os.45831.1.S1_x_at9/111+697335..702472hypothetical protein
LOC_Os01g02280Os.45831.2.S1_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280Os.45831.2.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02280OsAffx.23035.1.S1_x_at11/111+704142..711124NB-ARC domain containing protein
LOC_Os01g02290Os.1978.1.S1_at11/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.4.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02290OsAffx.23090.9.S1_x_at1/111+717432..720088Ser/Thr receptor-like kinase, putative, expressed
LOC_Os01g02300Os.27046.2.S1_x_at11/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02300Os.27046.1.S1_at10/111+720509..723123receptor kinase ORK10, putative, expressed
LOC_Os01g02310OsAffx.10878.1.S1_at11/111+725779..727732Thaumatin family protein, expressed
LOC_Os01g02310OsAffx.10878.2.S1_x_at11/111+725779..727732Thaumatin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45831.2.S1_x_at--646--6793Chr06:1195121..1195145 (25 bp)
GTTATCTGCACAGCGACGCTATCAA
LOC_Os06g03180
Os.45831.2.S1_x_at--890--9633Chr06:1195203..1195227 (25 bp)
TCAGTCACAGATGCCCTCGAAAATG
LOC_Os06g03180
Os.45831.2.S1_x_at--638--353Chr06:1195751..1195775 (25 bp)
ATAAGTAACTTCATTGTGGACGTGC
LOC_Os06g03180
Os.45831.2.S1_x_at--273--7513Chr06:1195766..1195790 (25 bp)
GTGGACGTGCAATGCTCCATATGGA
LOC_Os06g03180
Os.45831.2.S1_x_at--393--3093Chr06:1195816..1195840 (25 bp)
AATAATCCTTAGTCAATCTGCTGTG
LOC_Os06g03180
Os.45831.2.S1_x_at--197--7692Chr01:706596..706620 (25 bp)
GGGTTTAACCCTAATCAGAGGCTAT
LOC_Os01g02280
Os.45831.2.S1_x_at--421--8034Chr06:1195965..1195989 (25 bp)
GGAGTTGTCTAACCTAGCCAAAAAG
LOC_Os06g03180
Os.45831.2.S1_x_at--966--2713Chr06:1196069..1196089 (21 bp)
AAGCAGATATTTGTCCCTATCCTCA
LOC_Os06g03180
Os.45831.2.S1_x_at--540--9252Chr01:706747..706771 (25 bp)
TCCTCATTCGAGCTTTGGATGGTTC
LOC_Os01g02280
Os.45831.2.S1_x_at--875--2074Chr06:1196116..1196140 (25 bp)
ACATTGGTACTTGCTCGTGGTGGAC
LOC_Os06g03180
Os.45831.2.S1_x_at--1161--6874Chr06:1196158..1196182 (25 bp)
GTATATACTGGATTCCCTTCCATCA
LOC_Os06g03180
Target Sequence 
GTTATCTGCACAGCGACGCTATCAAGATTGTAAAGCAAAATCATTCGTCGATTGTAGAGATGTATGAGAAGATCATGAAG
ACTCAGTCACAGATGCCCTCGAAAATGGAAAGCTTGGTAGACAGATATAAAGATTTGGATGAGTTCTATTCAAAACACAT
TATGTCAAAAGCCGATTGGGAACAGAAACATTTCGGCAATAAGGCTGCGGTGGATATTAATGGCATTACCATTGCAGAAC
ATGATTTTGTAAAAAGCATGAAACTGAATGGATGGATAAGTAACTTCATTGTGGACGTGCAATGCTCCATATGGAGGGAG
GAGGAAGAATGGAAAGACAAAATAATCCTTAGTCAATCTGCTGTGAATGAACTGTTGGGTTTAACCCTAATCAGAGGCTA
TGTGGAAAAGGAGTTGTCTAACCTAGCCAAAAAGAAGCAGATATTTGTCCCTATCCTCATTCGAGCTTTGGATGGTTCTG
GTTTACATTGGTACTTGCTCGTGGTGGACATTGAGAATGGAATAAGGTATATACTGGATTCCCTTCCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45831.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis