Browse Element(s) Details


Os.45927.1.S1_at

Description gb:NM_190055.1
DB_XREF= gi:34907193
GEN=P0492G09.17
TID=Os.45927.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45927 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ethylene-forming enzyme (P0492G09.17), mRNA.
PROD=putative ethylene-forming enzyme
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7093011/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70900NANA1+41358624..41361797retrotransposon protein, putative, unclassified
LOC_Os01g70920Os.24785.2.A1_at11/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70920Os.24785.1.A1_at11/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70920Os.24785.2.A1_x_at9/111+41379208..41383258Cullin-1, putative, expressed
LOC_Os01g70930Os.45927.1.S1_at11/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70930Os.45927.1.S1_x_at11/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70930Os.51245.1.S1_at1/111+41384010..41385695oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g70940Os.26989.1.S1_a_at11/111+41387955..41393869Potassium transporter 7, putative, expressed
LOC_Os01g70950Os.23695.3.S1_x_at11/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70950Os.23695.2.S1_at3/111+41393885..41397603sperm protein SSP411, putative, expressed
LOC_Os01g70960Os.6336.1.S1_at11/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960Os.6336.2.S1_at10/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70960OsAffx.26985.1.S1_x_at1/111+41401280..41406111Cytochrome c1, heme protein, mitochondrial precursor, putative, expressed
LOC_Os01g70970Os.18382.1.S1_at11/111+41406321..41408855Protein kinase domain containing protein, expressed
LOC_Os01g70970OsAffx.12696.1.S1_at1/111+41406321..41408855Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009813biological_processflavonoid biosynthesis
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0016491molecular_functionoxidoreductase activity
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45927.1.S1_at--1067--3751Chr01:41384696..41384946 (25 bp)
CTCCGGCCAACTTTAGTAAGACGCT
LOC_Os01g70930
Os.45927.1.S1_at--602--3231Chr01:41384689..41384939 (25 bp)
CAACTTTAGTAAGACGCTGGAGAAG
LOC_Os01g70930
Os.45927.1.S1_at--591--3911Chr01:41384673..41384697 (25 bp)
CTGGAGAAGTACTCGGTGGAGATCA
LOC_Os01g70930
Os.45927.1.S1_at--1--7531Chr01:41384658..41384682 (25 bp)
GTGGAGATCAGGGAGCTGTGCGTGC
LOC_Os01g70930
Os.45927.1.S1_at--801--4471Chr01:41384596..41384620 (25 bp)
GCCGGCGAGGCTGAACGGGATGTTC
LOC_Os01g70930
Os.45927.1.S1_at--427--1671Chr01:41384210..41384234 (25 bp)
AGCCGCGCAGGTACCGGACGTACAA
LOC_Os01g70930
Os.45927.1.S1_at--750--4611Chr01:41384204..41384228 (25 bp)
GCAGGTACCGGACGTACAACCACGG
LOC_Os01g70930
Os.45927.1.S1_at--185--5851Chr01:41384200..41384224 (25 bp)
GTACCGGACGTACAACCACGGCGAG
LOC_Os01g70930
Os.45927.1.S1_at--438--8051Chr01:41384195..41384219 (25 bp)
GGACGTACAACCACGGCGAGTACAG
LOC_Os01g70930
Os.45927.1.S1_at--707--1931Chr01:41384183..41384207 (25 bp)
ACGGCGAGTACAGCCGGCACTACGT
LOC_Os01g70930
Os.45927.1.S1_at--829--1171Chr01:41384177..41384201 (25 bp)
AGTACAGCCGGCACTACGTCACCAG
LOC_Os01g70930
Target Sequence 
CTCCGGCCAACTTTAGTAAGACGCTGGAGAAGTACTCGGTGGAGATCAGGGAGCTGTGCGTGCGGCTGCTGGAGCACATC
GCGGCGGCGCTGGGGCTGGCGCCGGCGAGGCTGAACGGGATGTTCGGGGAGGCGGTGCAGGCGGTGAGGATGAACTTCTA
CCCGCCGTGCCCGCGGCCGGAGCTGGTGCTGGGGCTGAGCCCGCACTCCGACGGCAGCGCGGTCACCGTGCTCCAGCAGG
ACGCGGCGTTCGCCGGGCTGCAGGTGCTCCGGGGCGGCGGCGGCTGGGTGGCCGTCCATCCCGTCCCCGGCGCCCTCGTC
GTCAACGTCGGCGACACGCTCGAGGTGCTCACCAATGGCAGGTACAAGAGCGTGGAGCACCGGGCGGTGGCCAGCGGCGA
GCACGACCGCATGTCCGTCGTCACCTTCTACGCGCCGGCGTACGACGTCGAGCTCGGCCCGCTGCCGGAGCTCGTCGCCG
ACGGGGAGCCGCGCAGGTACCGGACGTACAACCACGGCGAGTACAGCCGGCACTACGTCACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis