Browse Element(s) Details


Os.45957.1.S1_at

Description gb:AK106705.1
DB_XREF= gi:32991914
TID=Os.45957.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45957 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686C03.48 (P0686C03.48), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E08, full insert sequence.
FL= gb:AK106705.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1169411/11retrotransposon protein, putative, unclassified, expressed
LOC_Os10g241701/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11640OsAffx.7082.1.S1_at11/1111+6468800..6469165hypothetical protein
LOC_Os11g11650OsAffx.30934.1.S1_at11/1111+6472433..6475896expressed protein
LOC_Os11g11660Os.12698.1.S1_at2/1111+6476188..6478113retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g11670OsAffx.30935.1.S1_at11/1111+6480185..6480935hypothetical protein
LOC_Os11g11680OsAffx.30936.1.S1_at11/1111+6490267..6490677LGC1, putative
LOC_Os11g11694Os.45957.1.S1_at11/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11694Os.45957.2.S1_x_at5/1111+6493100..6498258retrotransposon protein, putative, unclassified, expressed
LOC_Os11g11710Os.9643.1.S1_at11/1111+6505462..6506684expressed protein
LOC_Os11g11720OsAffx.7083.1.S1_x_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11720OsAffx.7083.1.S1_at11/1111+6511935..6513287Serpin family protein
LOC_Os11g11730Os.9607.1.S1_at11/1111+6515329..6517148expressed protein
LOC_Os11g11740OsAffx.30937.1.S1_at11/1111+6518181..6518816hypothetical protein
LOC_Os11g11750OsAffx.30938.1.S1_at11/1111+6521026..6521445hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45957.1.S1_at--829--10291Chr11:6493670..6493694 (25 bp)
TTTCAGGTACTTTGGTCCATACAAG
LOC_Os11g11694
Os.45957.1.S1_at--533--3291Chr11:6493597..6493621 (25 bp)
CAAAGTCAAGTTCATCCGGTAGTCC
LOC_Os11g11694
Os.45957.1.S1_at--714--6932Chr11:6493579..6493603 (25 bp)
GTAGTCCATGTGTCTCTTCTCAAGA
LOC_Os11g11694
Os.45957.1.S1_at--1002--5591Chr11:6493306..6493330 (25 bp)
GAAATTGTTATGTGTTGTGTGTGCT
LOC_Os11g11694
Os.45957.1.S1_at--1084--7472Chr11:6493290..6493314 (25 bp)
GTGTGTGCTGTAGCTTGTCAGCTGT
LOC_Os11g11694
Os.45957.1.S1_at--380--9672Chr11:6501613..6501637 (25 bp)
TCAGCTGTTGTGTTCCCTGTATTGA
NONE
Os.45957.1.S1_at--683--7412Chr11:6501604..6501628 (25 bp)
GTGTTCCCTGTATTGAGTATAACTG
NONE
Os.45957.1.S1_at--36--352Chr11:6501586..6501610 (25 bp)
ATAACTGGGTGTTTGGGCCTGGCTT
NONE
Os.45957.1.S1_at--552--4651Chr11:6493161..6493185 (25 bp)
GCGTCGAGTGCGTGTGTCTTGTACC
LOC_Os11g11694
Os.45957.1.S1_at--160--4672Chr11:6501496..6501520 (25 bp)
GCGTGTGTCTTGTACCCGTTAAAAG
NONE
Os.45957.1.S1_at--295--3833Chr11:6501462..6501486 (25 bp)
CTGCCGATGAGCAGGTATCGATGAG
NONE
Target Sequence 
TTTCAGGTACTTTGGTCCATACAAGATTTTGGAGCNCATTGGAGAGGTGGCATANAAATTNGACNTGCCCCCACAAAGTC
AAGTTCATCCGGTAGTCCATGTGTCTCTTCTCAAGAAGGCAATNCNGTCCTGATGNCCAAGTTCAAGCCGATCTTCCAGC
AAGTNGCATGGNAGAAGATGCAGCAATTNTTNCNTGNAGAAATTTTGCNCCGTNAACTNATCAAGCGAGGTAATNCAGCT
GNGCCCTATGGATTAGTCCGNTGGACNGGTTTGCCTGCCGCTNTTGCTNCATGGGAGAATCTANGACAGNTGCAATTNTC
GTTTCCCATNTTCTCCNGCTTGGGGACAAGCCTCNTNTTAAGCGGGGGAAATTGTTATGTGTTGTGTGTGCTGTAGCTTG
TCAGCTGTTGTGTTCCCTGTATTGAGTATAACTGGGTGTTTGGGCCTGGCTTGTTGTGGGCCGTGGACCGTGTGTGTGTG
TGTTTACGACGTGCCGTGCTGGACTGGCGGTCGCGTCGAGTGCGTGTGTCTTGTACCCGTTAAAAGGGGAACTCCCTGCC
GATGAGCAGGTATCGATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45957.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis