Browse Element(s) Details


Os.45980.1.S1_s_at

Description gb:NM_188316.1
DB_XREF= gi:34903715
GEN=P0489A05.24
TID=Os.45980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45980 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative major intrinsic protein (P0489A05.24), mRNA.
PROD=putative major intrinsic protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1053010/11Major intrinsic protein, expressed
LOC_Os01g1060010/11Aquaporin NIP1.2, putative, expressed
LOC_Os06g448601/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10504Os.320.2.S1_a_at11/111+5557004..5565646Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os01g10520OsAffx.22137.1.S1_at11/111+5575556..5582069expressed protein
LOC_Os01g10520OsAffx.22137.1.S1_x_at10/111+5575556..5582069expressed protein
LOC_Os01g10520Os.23504.1.A1_at6/111+5575556..5582069expressed protein
LOC_Os01g10530OsAffx.23187.1.S1_at11/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10530Os.45980.1.S1_s_at10/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10530Os.1288.1.S1_at4/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10530Os.45980.1.S1_at1/111+5588074..5590435Major intrinsic protein, expressed
LOC_Os01g10540OsAffx.22137.1.S1_at11/111+5590591..5595948expressed protein
LOC_Os01g10540OsAffx.22137.1.S1_x_at11/111+5590591..5595948expressed protein
LOC_Os01g10540Os.1288.1.S1_at3/111+5590591..5595948expressed protein
LOC_Os01g10550OsAffx.23188.1.S1_x_at3/111+5597523..5597976hypothetical protein
LOC_Os01g10550OsAffx.23188.1.S1_at2/111+5597523..5597976hypothetical protein
LOC_Os01g10560NANA1+5613162..5613695transposon protein, putative, unclassified
LOC_Os01g10570Os.43567.1.S1_x_at4/111+5615324..5615990retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g10570Os.38172.1.S1_x_at2/111+5615324..5615990retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009554biological_processmegasporogenesis
GO:0009556biological_processmicrosporogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0016020cellular_componentmembrane
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45980.1.S1_s_at--466--3532Chr01:5661026..5661050 (25 bp)
CATCGTACGTGGTGGCCCAGGTGCT
LOC_Os01g10600
Os.45980.1.S1_s_at--771--3472Chr01:5661009..5661033 (25 bp)
CAGGTGCTGGGATCCACCATGGCAA
LOC_Os01g10600
Os.45980.1.S1_s_at--675--8632Chr01:5661002..5661026 (25 bp)
TGGGATCCACCATGGCAAGCCTGAC
LOC_Os01g10600
Os.45980.1.S1_s_at--834--2652Chr01:5660986..5661010 (25 bp)
AAGCCTGACGCTGCGCGTGGTGTTC
LOC_Os01g10600
Os.45980.1.S1_s_at--971--4651NONE
GCGTCGCCACGGACAACAGAGCAAT
NONE
Os.45980.1.S1_s_at--485--1932Chr01:5660745..5660853 (25 bp)
ACGGACAACAGAGCAATCGGTGAAT
LOC_Os01g10600
Os.45980.1.S1_s_at--118--3052Chr01:5660731..5660754 (24 bp)
AATCGGTGAATTGGCTGGGCTCGCT
LOC_Os01g10600
Os.45980.1.S1_s_at--912--5732Chr01:5660698..5660722 (25 bp)
GACGGTCGCGGTGAACGTGCTCTTC
LOC_Os01g10600
Os.45980.1.S1_s_at--950--8972Chr01:5660240..5660711 (25 bp)
TGAACGTGCTCTTCGCAGGGCCGGT
LOC_Os01g10600
Os.45980.1.S1_s_at--770--9372Chr01:5660298..5660322 (25 bp)
TCGATGAACCCGGCTCGGAGCCTTG
LOC_Os01g10600
Os.45980.1.S1_s_at--494--8633Chr06:27115200..27115368 (25 bp)
TGTGGGTGTACGTGGCGGCGCCGGT
LOC_Os06g44860
Target Sequence 
CATCGTACGTGGTGGCCCAGGTGCTGGGATCCACCATGGCAAGCCTGACGCTGCGCGTGGTGTTCGGCGGCGGCGGCGGC
GGCGCGCGCGGGGAGCACTTGTTCTTCGGGACGACGCCGGCGGGGTCGATGGCGCAGGCGGCGGCGCTGGAGTTCGTCAT
CTCCTTCTTCCTCATGTTCGTCGTCTCCGGCGTCGCCACGGACAACAGAGCAATCGGTGAATTGGCTGGGCTCGCTGTCG
GTGCGACGGTCGCGGTGAACGTGCTCTTCGCAGGGCCGGTGACGGGGGCGTCGATGAACCCGGCTCGGAGCCTTGGTCCG
GCGATGGTGGCGGGGAGGTACGGCGGCGTGTGGGTGTACGTGGCGGCGCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45980.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis