Browse Element(s) Details


Os.46001.1.S1_at

Description gb:NM_190789.1
DB_XREF= gi:34908661
GEN=P0039A07.10
TID=Os.46001.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0039A07.10 (P0039A07.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0039A07.10 (P0039A07.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6499011/11GPI transamidase subunit PIG-U family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64960Os.10671.1.S1_at11/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64960Os.45428.1.S1_at1/111+38023839..38026587Photosystem II 22 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g64970Os.12646.1.S1_at11/111+38037090..38041730Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os01g64980Os.32637.1.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.2.S1_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64980Os.32637.3.S1_x_at11/111+38041706..38047501Ion channel DMI1, chloroplast precursor, putative, expressed
LOC_Os01g64990Os.46001.1.S1_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g64990OsAffx.2410.1.A1_x_at11/111+38049159..38058754GPI transamidase subunit PIG-U family protein, expressed
LOC_Os01g65000Os.25771.1.S1_at9/111+38062129..38064490Ammonium transporter 2, putative, expressed
LOC_Os01g65010OsAffx.29815.1.S1_x_at1/111+38066314..38069570D-mannose binding lectin family protein, expressed
LOC_Os01g65030Os.52175.1.S1_at11/111+38072375..38075424D-mannose binding lectin family protein, expressed
LOC_Os01g65030OsAffx.11739.1.S1_x_at2/111+38072375..38075424D-mannose binding lectin family protein, expressed
LOC_Os01g65040OsAffx.11739.1.S1_x_at11/111+38079472..38079912hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46001.1.S1_at--788--10311Chr01:38058591..38058697 (25 bp)
TTTCTATTACAGATTCCCATGCATA
LOC_Os01g64990
Os.46001.1.S1_at--93--151Chr01:38058596..38058702 (25 bp)
ATTACAGATTCCCATGCATATTTTG
LOC_Os01g64990
Os.46001.1.S1_at--824--2131Chr01:38058599..38058705 (25 bp)
ACAGATTCCCATGCATATTTTGATT
LOC_Os01g64990
Os.46001.1.S1_at--550--6571Chr01:38058687..38058708 (22 bp)
GATTCCCATGCATATTTTGATTTAG
LOC_Os01g64990
Os.46001.1.S1_at--435--4951Chr01:38058693..38058717 (25 bp)
GCATATTTTGATTTAGACACGTCCT
LOC_Os01g64990
Os.46001.1.S1_at--806--6531Chr01:38058702..38058726 (25 bp)
GATTTAGACACGTCCTTTTCCATGA
LOC_Os01g64990
Os.46001.1.S1_at--484--10331Chr01:38058704..38058728 (25 bp)
TTTAGACACGTCCTTTTCCATGATC
LOC_Os01g64990
Os.46001.1.S1_at--123--10031Chr01:38058706..38058730 (25 bp)
TAGACACGTCCTTTTCCATGATCAG
LOC_Os01g64990
Os.46001.1.S1_at--749--5631Chr01:38058708..38058732 (25 bp)
GACACGTCCTTTTCCATGATCAGGA
LOC_Os01g64990
Os.46001.1.S1_at--733--1871Chr01:38058711..38058735 (25 bp)
ACGTCCTTTTCCATGATCAGGATGG
LOC_Os01g64990
Os.46001.1.S1_at--282--7251Chr01:38058713..38058737 (25 bp)
GTCCTTTTCCATGATCAGGATGGTG
LOC_Os01g64990
Target Sequence 
TTTCTATTACAGATTCCCATGCATATTTTGATTTAGACACGTCCTTTTCCATGATCAGGATGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis