Browse Element(s) Details


Os.46009.1.S1_at

Description gb:NM_191472.1
DB_XREF= gi:34910027
GEN=P0413G02.15
TID=Os.46009.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46009 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative low density lipoprotein (P0413G02.15), mRNA.
PROD=putative low density lipoprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5691011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56870Os.52721.1.S1_at10/111+33169562..33174732expressed protein
LOC_Os01g56880Os.15904.1.S1_at11/111+33175084..33179387expressed protein
LOC_Os01g56890Os.8123.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56890OsAffx.11629.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56900Os.10706.1.S1_a_at11/111+33187802..33190344expressed protein
LOC_Os01g56910Os.46009.1.S1_at11/111+33196141..33205044expressed protein
LOC_Os01g56930Os.19849.1.S1_at10/111+33213733..33219492aspartyl protease family protein, putative, expressed
LOC_Os01g56940Os.47361.1.S1_at10/111+33220231..33226565XPG I-region family protein, expressed
LOC_Os01g56949Os.5389.1.S1_s_at11/111+33227739..33229476expressed protein
LOC_Os01g56949Os.5389.1.S1_at11/111+33227739..33229476expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46009.1.S1_at--458--3611Chr01:33199907..33199931 (25 bp)
CATTGGCGATGTTCTGTCAGGAGGC
LOC_Os01g56910
Os.46009.1.S1_at--659--3471Chr01:33199924..33199948 (25 bp)
CAGGAGGCAAAAGTTCTTCCACCAA
LOC_Os01g56910
Os.46009.1.S1_at--844--5971Chr01:33199964..33199988 (25 bp)
GAGAACACATGACTCTTCGCCAAGC
LOC_Os01g56910
Os.46009.1.S1_at--293--10651Chr01:33199979..33200003 (25 bp)
TTCGCCAAGCGCCATTGCTAAGACT
LOC_Os01g56910
Os.46009.1.S1_at--946--3171Chr01:33200025..33200049 (25 bp)
CAATTGCAGGCAGATTCAGCTACCA
LOC_Os01g56910
Os.46009.1.S1_at--530--6731Chr01:33200078..33200102 (25 bp)
GTTCTCACAGAGATTGGATCCGATA
LOC_Os01g56910
Os.46009.1.S1_at--227--3251Chr01:33200293..33200317 (25 bp)
CAAGCGCTATGTTGTTCTTTTCGGC
LOC_Os01g56910
Os.46009.1.S1_at--120--10391Chr01:33200310..33200334 (25 bp)
TTTTCGGCTTCTTGGTTCAACTGAA
LOC_Os01g56910
Os.46009.1.S1_at--651--2511Chr01:33200390..33200414 (25 bp)
AACATTATGAGGTGCTCCCAAGTCC
LOC_Os01g56910
Os.46009.1.S1_at--70--731Chr01:33200780..33200804 (25 bp)
ATGATTCCACATCTAGAAGCCCTTG
LOC_Os01g56910
Os.46009.1.S1_at--484--3831Chr01:33200873..33200897 (25 bp)
CTGCTCCATTGCTCAAGTCATTTGT
LOC_Os01g56910
Target Sequence 
CATTGGCGATGTTCTGTCAGGAGGCAAAAGTTCTTCCACCAAAACTACTGAAACACAGAGAACACATGACTCTTCGCCAA
GCGCCATTGCTAAGACTTCCTTCAGGAGAAAACAGTCACAATTGCAGGCAGATTCAGCTACCATAGAGCCTATAAACAAG
CTGATCAATAAGTTCTCACAGAGATTGGATCCGATAGACTGGGCTNNNTACGAACCTTATCTGTGGGAGAATGAGAAGCA
ATCTTACAAGCGCTATGTTGTTCTTTTCGGCTTCTTGGTTCAACTGAATCACATGTATACTGGAACTGTGCAAAAGTTAC
CNACTAAATCAAATACAGATTCAAACATTATGAGGTGCTCCCAAGTCCCAAGATTCAAATACCTACCGATCNNNGCCCCA
GCTCTATCATCAAGAGCACACAAATCATCATTACAGTCAACATCCGATGATTCCACATCTAGAAGCCCTTGGAAATCATA
TTCANATGGAGAAAGATCTACGGCATCAGAATTTGATGATAATGTTAGCCTTGGAGGTGCTGCTCCATTGCTCAAGTCAT
TTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis