Browse Element(s) Details


Os.46015.1.A1_s_at

Description gb:CF301810
DB_XREF= gi:33673571
DB_XREF=7LEAF--06-M23.b1
CLONE=7LEAF--06-M23
TID=Os.46015.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.46015 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4183011/11Sulfite oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41790Os.9281.1.S1_at11/118+26256896..26262446uridine kinase family protein, expressed
LOC_Os08g41800Os.52393.1.S1_at1/118+26265481..26268259regulatory protein, putative, expressed
LOC_Os08g41810Os.10112.1.S1_at11/118+26273183..2627568460S ribosomal protein L17, putative, expressed
LOC_Os08g41820OsAffx.29627.2.S1_at11/118+26281044..26283096Exo70 exocyst complex subunit family protein, expressed
LOC_Os08g41830Os.46015.1.A1_s_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41830Os.18635.1.S1_at11/118+26284917..26289847Sulfite oxidase, putative, expressed
LOC_Os08g41840NANA8+26289375..26291137expressed protein
LOC_Os08g41850Os.5027.1.S1_at11/118+26298314..26300096hypothetical protein
LOC_Os08g41850Os.5027.1.S2_at3/118+26298314..26300096hypothetical protein
LOC_Os08g41860NANA8+26301832..26302287hypothetical protein
LOC_Os08g41870OsAffx.28601.3.S1_x_at9/118+26303304..26304489hypothetical protein
LOC_Os08g41870OsAffx.28601.3.S1_at8/118+26303304..26304489hypothetical protein
LOC_Os08g41880Os.10305.1.S1_at11/118+26306752..26312631Metallophosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006790biological_processsulfur metabolism
GO:0009416biological_processresponse to light stimulus
GO:0042128biological_processnitrate assimilation
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0008134molecular_functiontranscription factor binding
GO:0008482molecular_functionsulfite oxidase activity
GO:0008940molecular_functionnitrate reductase activity
GO:0009703molecular_functionnitrate reductase (NADH) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46015.1.A1_s_at--2--8651Chr08:26289055..26289079 (25 bp)
TGGGAAGATCCAAAATGTGAAATAA
LOC_Os08g41830
Os.46015.1.A1_s_at--11--5591Chr08:26289073..26289097 (25 bp)
GAAATAAGTAAACTGCTTGGAATCA
LOC_Os08g41830
Os.46015.1.A1_s_at--80--10191Chr08:26289111..26289135 (25 bp)
TATAGTGCCCGGAATAATAAGTTAT
LOC_Os08g41830
Os.46015.1.A1_s_at--594--7291Chr08:26289115..26289139 (25 bp)
GTGCCCGGAATAATAAGTTATTGCA
LOC_Os08g41830
Os.46015.1.A1_s_at--1002--1171Chr08:26289178..26289202 (25 bp)
AGTACTATGTTGGAATCGTGTTGCT
LOC_Os08g41830
Os.46015.1.A1_s_at--951--2031Chr08:26289181..26289205 (25 bp)
ACTATGTTGGAATCGTGTTGCTGGC
LOC_Os08g41830
Os.46015.1.A1_s_at--321--731Chr08:26289184..26289208 (25 bp)
ATGTTGGAATCGTGTTGCTGGCCTG
LOC_Os08g41830
Os.46015.1.A1_s_at--876--5251Chr08:26289190..26289214 (25 bp)
GAATCGTGTTGCTGGCCTGGGCTTA
LOC_Os08g41830
Os.46015.1.A1_s_at--442--7411Chr08:26289195..26289219 (25 bp)
GTGTTGCTGGCCTGGGCTTATATGA
LOC_Os08g41830
Os.46015.1.A1_s_at--513--4711Chr08:26289200..26289224 (25 bp)
GCTGGCCTGGGCTTATATGAGACGA
LOC_Os08g41830
Os.46015.1.A1_s_at--92--8431Chr08:26289203..26289227 (25 bp)
GGCCTGGGCTTATATGAGACGAAAC
LOC_Os08g41830
Target Sequence 
TGGGAAGATCCAAAATGTGAAATAAGTAAACTGCTTGGAATCANAAGTCAANAGTTTATAGTGCCCGGAATAATAAGTTA
TTGCANCATTCGATGATTTTCNCAGACTGGGCTCCTGTACAANAGTACTATGTTGGAATCGTGTTGCTGGCCTGGGCTTA
TATGAGACGAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46015.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis